Browse Element(s) Details


OsAffx.26099.1.S1_at

Description tigr:9632.m02081
TID=OsAffx.26099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2251011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22470OsAffx.26937.5.S1_at11/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22470OsAffx.26937.4.S1_x_at1/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22480OsAffx.13924.1.S1_at10/114+12703054..12704767hypothetical protein
LOC_Os04g22490NANA4+12708467..12712036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22500NANA4+12717238..12719618retrotransposon protein, putative, unclassified
LOC_Os04g22510OsAffx.26099.1.S1_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22510OsAffx.26099.1.S1_x_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22520OsAffx.20730.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.20733.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.9790.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.1197.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22540OsAffx.26101.1.S1_at11/114+12742096..12743205hypothetical protein
LOC_Os04g22550OsAffx.3860.1.S1_at11/114+12744349..12745621hypothetical protein
LOC_Os04g22560Os.45161.1.A1_x_at3/114+12748299..12749075hypothetical protein
LOC_Os04g22570NANA4+12749781..12757141retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26099.1.S1_at--368--4671Chr04:12725881..12725905 (25 bp)
GCGGGTGCGGCGGATCAGGTGACGG
LOC_Os04g22510
OsAffx.26099.1.S1_at--433--411Chr04:12725868..12725892 (25 bp)
ATCAGGTGACGGGTGTGGTCATCTT
LOC_Os04g22510
OsAffx.26099.1.S1_at--555--3411Chr04:12725866..12725890 (25 bp)
CAGGTGACGGGTGTGGTCATCTTCC
LOC_Os04g22510
OsAffx.26099.1.S1_at--886--7751Chr04:12725864..12725888 (25 bp)
GGTGACGGGTGTGGTCATCTTCCTC
LOC_Os04g22510
OsAffx.26099.1.S1_at--856--7191Chr04:12725839..12725863 (25 bp)
GTCGTCATGGTCGTCTTTTTCGTCG
LOC_Os04g22510
OsAffx.26099.1.S1_at--317--9411Chr04:12725838..12725862 (25 bp)
TCGTCATGGTCGTCTTTTTCGTCGT
LOC_Os04g22510
OsAffx.26099.1.S1_at--404--7151Chr04:12725827..12725851 (25 bp)
GTCTTTTTCGTCGTCATGGAAGTCG
LOC_Os04g22510
OsAffx.26099.1.S1_at--651--3651Chr04:12725825..12725849 (25 bp)
CTTTTTCGTCGTCATGGAAGTCGAC
LOC_Os04g22510
OsAffx.26099.1.S1_at--557--10371Chr04:12725823..12725847 (25 bp)
TTTTCGTCGTCATGGAAGTCGACGG
LOC_Os04g22510
OsAffx.26099.1.S1_at--411--5731Chr04:12725803..12725827 (25 bp)
GACGGTGGTGCGATTCCCCTACCCT
LOC_Os04g22510
OsAffx.26099.1.S1_at--98--7571Chr04:12725733..12725757 (25 bp)
GGGCGAAGGCGGTGGCATGGCCAGA
LOC_Os04g22510
Target Sequence 
GCGGGTGCGGCGGATCAGGTGACGGGTGTGGTCATCTTCCTCGTCGTCATGGTCGTCTTTTTCGTCGTCATGGAAGTCGA
CGGTGGTGCGATTCCCCTACCCTCCCTCCCCCACTCCCTCTTTGTCTCCCTCACAGATCTGGCGGAGGGGGCGAAGGCGG
TGGCATGGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis