Browse Element(s) Details


OsAffx.13924.1.S1_at

Description tigr:9632.m02078
TID=OsAffx.13924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2248010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22440OsAffx.13923.2.S1_at11/114+12683141..12683689hypothetical protein
LOC_Os04g22450OsAffx.26097.1.S1_at11/114+12686482..12686847hypothetical protein
LOC_Os04g22460OsAffx.31579.1.S1_at2/114+12688491..12690263retrotransposon protein, putative, unclassified
LOC_Os04g22470OsAffx.26937.5.S1_at11/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22470OsAffx.26937.4.S1_x_at1/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22480OsAffx.13924.1.S1_at10/114+12703054..12704767hypothetical protein
LOC_Os04g22490NANA4+12708467..12712036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22500NANA4+12717238..12719618retrotransposon protein, putative, unclassified
LOC_Os04g22510OsAffx.26099.1.S1_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22510OsAffx.26099.1.S1_x_at11/114+12725627..12725944hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13924.1.S1_at--525--8451Chr04:12703154..12703178 (25 bp)
GGCCAAGCACTGGAGCCCAAGACAA
LOC_Os04g22480
OsAffx.13924.1.S1_at--867--3911NONE
CGGCCCAACACCAAATCAACAGAGT
NONE
OsAffx.13924.1.S1_at--117--7931Chr04:12704282..12704306 (25 bp)
GGATTACTTGGAGAAACCACGCTAT
LOC_Os04g22480
OsAffx.13924.1.S1_at--1152--10151Chr04:12704304..12704328 (25 bp)
TATCATTCTCGTGCGTAGCTCAAGC
LOC_Os04g22480
OsAffx.13924.1.S1_at--50--2651Chr04:12704384..12704408 (25 bp)
AAGCCAACCATAGACAAGGCGGTGG
LOC_Os04g22480
OsAffx.13924.1.S1_at--402--4651Chr04:12704437..12704461 (25 bp)
GCGTCATCAAGTGAATCAGCTCTCA
LOC_Os04g22480
OsAffx.13924.1.S1_at--929--2651Chr04:12704469..12704493 (25 bp)
AAGCCAGTGCTATCAAGCCAGCGGA
LOC_Os04g22480
OsAffx.13924.1.S1_at--500--7631Chr04:12704631..12704655 (25 bp)
GGGAGAATACCTCTCCATTGTCTCT
LOC_Os04g22480
OsAffx.13924.1.S1_at--1133--9472Chr04:12704651..12704675 (25 bp)
TCTCTCCCGGGCAAGGGTACATTTA
LOC_Os04g22480
OsAffx.13924.1.S1_at--830--7671Chr04:12704665..12704689 (25 bp)
GGGTACATTTACTCCTCAATTTGCT
LOC_Os04g22480
OsAffx.13924.1.S1_at--1159--3111Chr04:12704682..12704706 (25 bp)
AATTTGCTTCTCGAAATGGACGTGA
LOC_Os04g22480
Target Sequence 
GGCCAAGCACTGGAGCCCAAGACAACCTCCTCTCCCACCACCGGATTGGCCTAGCACGGCCCAACACCAAATCAACAGAG
TTCGTAACAATAGGTATCAGAGCAATCGATCCTGGATTACTTGGAGAAACCACGCTATCATTCTCGTGCGTAGCTCAAGC
TTCGGTGGGGTTGTTGGAGGAAATCAAGCCCATGGTGGTGGAGCTAGCGGGGTGGAAGCCAACCATAGACAAGGCGGTGG
TGGAGTTGCGAGAGGATATTGGGGACTTGCGTCATCAAGTGAATCAGCTCTCAAAACAGCAAGCCAGTGCTATCAAGCCA
GCGGAGCGGCCGCCGCTGCTTCCCACATCGCCAGGATCTCGTCCGCTGCCGAAGGAGGAGGAGACTTGTCCAAGTCATGG
TGACATGGGTCACGGGCCGTTAGGCCACCGCGCGGGAATTTCACTCCGGGGAAAGGCGATTGGGGAGAATACCTCTCCAT
TGTCTCTCCCGGGCAAGGGTACATTTACTCCTCAATTTGCTTCTCGAAATGGACGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis