Browse Element(s) Details


OsAffx.13923.2.S1_at

Description tigr:9632.m02074
TID=OsAffx.13923.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2244011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22400NANA4+12660764..12666779retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22410OsAffx.13922.1.S1_at11/114+12669773..12670468hypothetical protein
LOC_Os04g22420NANA4+12672349..12673107retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22430Os.35046.2.S1_x_at1/114+12673522..12676614retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22440OsAffx.13923.2.S1_at11/114+12683141..12683689hypothetical protein
LOC_Os04g22450OsAffx.26097.1.S1_at11/114+12686482..12686847hypothetical protein
LOC_Os04g22460OsAffx.31579.1.S1_at2/114+12688491..12690263retrotransposon protein, putative, unclassified
LOC_Os04g22470OsAffx.26937.5.S1_at11/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22470OsAffx.26937.4.S1_x_at1/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22480OsAffx.13924.1.S1_at10/114+12703054..12704767hypothetical protein
LOC_Os04g22490NANA4+12708467..12712036retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13923.2.S1_at--370--7411Chr04:12683433..12683457 (25 bp)
GTGTTGTCCCCGTGCTAGCGCCGCT
LOC_Os04g22440
OsAffx.13923.2.S1_at--183--4631Chr04:12683340..12683364 (25 bp)
GCGAGGACCGGACGGCACCCACATC
LOC_Os04g22440
OsAffx.13923.2.S1_at--955--2091Chr04:12683320..12683344 (25 bp)
ACATCGTCGTGCTGTCCCGTGCTGT
LOC_Os04g22440
OsAffx.13923.2.S1_at--672--8711Chr04:12683308..12683332 (25 bp)
TGTCCCGTGCTGTCGCCGCATCTGG
LOC_Os04g22440
OsAffx.13923.2.S1_at--794--4971Chr04:12683291..12683315 (25 bp)
GCATCTGGGCGCTGCTAAGGGCACC
LOC_Os04g22440
OsAffx.13923.2.S1_at--142--7571Chr04:12683285..12683309 (25 bp)
GGGCGCTGCTAAGGGCACCCATCGT
LOC_Os04g22440
OsAffx.13923.2.S1_at--753--2871Chr04:12683275..12683299 (25 bp)
AAGGGCACCCATCGTCGTGCTGGCA
LOC_Os04g22440
OsAffx.13923.2.S1_at--487--511Chr04:12683245..12683269 (25 bp)
ATCGTCGTGCTGTCGCCATGCTCAG
LOC_Os04g22440
OsAffx.13923.2.S1_at--497--7311Chr04:12683239..12683263 (25 bp)
GTGCTGTCGCCATGCTCAGTGTTCT
LOC_Os04g22440
OsAffx.13923.2.S1_at--437--631Chr04:12683228..12683252 (25 bp)
ATGCTCAGTGTTCTCGCTGCCAAGG
LOC_Os04g22440
OsAffx.13923.2.S1_at--991--4811Chr04:12683226..12683250 (25 bp)
GCTCAGTGTTCTCGCTGCCAAGGGC
LOC_Os04g22440
Target Sequence 
GTGTTGTCCCCGTGCTAGCGCCGCTGCCGCATCAGGCCTCTACGCTGCTCATCCTCGATGACACCGACCTCCTCCCCAAC
GATGACGATGACGGCGAGGACCGGACGGCACCCACATCGTCGTGCTGTCCCGTGCTGTCGCCGCATCTGGGCGCTGCTAA
GGGCACCCATCGTCGTGCTGGCACCCGCATCGTCGTGCTGTCGCCATGCTCAGTGTTCTCGCTGCCAAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13923.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis