Browse Element(s) Details


OsAffx.24595.1.S1_s_at

Description gb:NM_184167.1
DB_XREF= gi:34895425
GEN=P0445D12.23
TID=OsAffx.24595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445D12.23 (P0445D12.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0328011/11hypothetical protein
LOC_Os03g127607/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g362907/11hypothetical protein
LOC_Os12g069407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03230Os.54806.1.S1_at11/111+1306654..1308370retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g03240Os.46986.1.S1_at3/111+1310038..1311076hypothetical protein
LOC_Os01g03250NANA1+1312070..1312279hypothetical protein
LOC_Os01g03260OsAffx.23093.2.S1_at10/111+1312625..1316665hypothetical protein
LOC_Os01g03270OsAffx.23096.1.S1_s_at11/111+1324974..1325971hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24595.1.S1_s_at--385--7296Chr09:10009942..10009966 (25 bp)
GTGCCCCGGTGGTCCAGTGCATGCC
NONE
OsAffx.24595.1.S1_s_at--397--7797Chr09:10009952..10009976 (25 bp)
GGTCCAGTGCATGCCCGGAGCAGGT
NONE
OsAffx.24595.1.S1_s_at--708--8476Chr09:10009976..10010000 (25 bp)
TGGCGACCTCCGGTGAGCTGCAAGC
NONE
OsAffx.24595.1.S1_s_at--467--4296Chr09:10009982..10010014 (25 bp)
CCTCCGGTGAGCTGCAAGCTGGCGA
NONE
OsAffx.24595.1.S1_s_at--171--916Chr01:31078143..31078167 (25 bp)
AGGCGGTGGTCCAGCACTCCAGCGC
NONE
OsAffx.24595.1.S1_s_at--1159--3477Chr09:10010191..10010215 (25 bp)
CAGGCAGCAGGTCAGCGGCACAGTG
NONE
OsAffx.24595.1.S1_s_at--415--2137Chr09:10010210..10010234 (25 bp)
ACAGTGGCCGGCAAGGCAGCAACGA
NONE
OsAffx.24595.1.S1_s_at--861--2937Chr09:10010222..10010246 (25 bp)
AAGGCAGCAACGAGTCAACGACGCA
NONE
OsAffx.24595.1.S1_s_at--647--2577Chr09:10010230..10010254 (25 bp)
AACGAGTCAACGACGCAGTCGCAGC
NONE
OsAffx.24595.1.S1_s_at--1079--1137Chr09:10010246..10010270 (25 bp)
AGTCGCAGCCTACTGTGACTGTGAT
NONE
OsAffx.24595.1.S1_s_at--531--3897Chr09:10010258..10010282 (25 bp)
CTGTGACTGTGATTGAAGATTTGAA
NONE
Target Sequence 
GTGCCCCGGTGGTCCAGTGCATGCCCGGAGCAGGTGGCGACCTCCGGTGAGCTGCAAGCTGGCGAGCGCCGAGCGGCAAG
GTGCCGTGGCGGCGTCCAGTGAGCCGGCGATGGGCCAGACAGAAGGCAGGCCAGGCGGAGGCGGTGGTCCAGCACTCCAG
CGCCTGCGCCGCCACGCCGCCGGGAAGGTGGCGAGCCGCTCGCTGGCGAGGTGCCGCGAGGGCGCAAGGCGCCGAGGCAG
GCAGGCAGCAGGTCAGCGGCACAGTGGCCGGCAAGGCAGCAACGAGTCAACGACGCAGTCGCAGCCTACTGTGACTGTGA
TTGAAGATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24595.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis