Browse Element(s) Details


OsAffx.22807.1.S1_at

Description tigr:9629.m00244
TID=OsAffx.22807.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0329011/11Seven in absentia protein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03230Os.54806.1.S1_at11/111+1306654..1308370retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g03240Os.46986.1.S1_at3/111+1310038..1311076hypothetical protein
LOC_Os01g03250NANA1+1312070..1312279hypothetical protein
LOC_Os01g03260OsAffx.23093.2.S1_at10/111+1312625..1316665hypothetical protein
LOC_Os01g03270OsAffx.23096.1.S1_s_at11/111+1324974..1325971hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22807.1.S1_at--292--771Chr01:1331105..1331129 (25 bp)
ATGTCTGCTCCCTGCAGGTTCAGCA
LOC_Os01g03290
OsAffx.22807.1.S1_at--963--5091Chr01:1331083..1331107 (25 bp)
GCACGAGCGCCTACATGAGGTTGAT
LOC_Os01g03290
OsAffx.22807.1.S1_at--821--8331Chr01:1331048..1331072 (25 bp)
GGCTGCACGGAGATCGTCGCCTACA
LOC_Os01g03290
OsAffx.22807.1.S1_at--771--4291Chr01:1331029..1331053 (25 bp)
CCTACACCGAGAGGCGGAATCACGA
LOC_Os01g03290
OsAffx.22807.1.S1_at--697--10631Chr01:1330970..1330994 (25 bp)
TTCGACGGCTGCAACTACCAGGGAC
LOC_Os01g03290
OsAffx.22807.1.S1_at--596--1711Chr01:1330954..1330978 (25 bp)
ACCAGGGACACTTGCTGTACAGCCA
LOC_Os01g03290
OsAffx.22807.1.S1_at--180--8751Chr01:1330939..1330963 (25 bp)
TGTACAGCCACATCCAGGACGAACA
LOC_Os01g03290
OsAffx.22807.1.S1_at--90--1951Chr01:1330786..1330810 (25 bp)
ACGGCGACAACGTCCTGTCGGGCCG
LOC_Os01g03290
OsAffx.22807.1.S1_at--586--5891Chr01:1330664..1330688 (25 bp)
GAGCTCGGTCTGTCCATGTCGGGTA
LOC_Os01g03290
OsAffx.22807.1.S1_at--386--7251Chr01:1330654..1330678 (25 bp)
TGTCCATGTCGGGTACCGTCCCGTG
LOC_Os01g03290
OsAffx.22807.1.S1_at--1052--5791Chr01:1330607..1330631 (25 bp)
GACGCGAAGGCGTTCCTGTTCGTGC
LOC_Os01g03290
Target Sequence 
ATGTCTGCTCCCTGCAGGTTCAGCACGAGCGCCTACATGAGGTTGATCAGGGCGAGCGGCTGCACGGAGATCGTCGCCTA
CACCGAGAGGCGGAATCACGAGGCGTCGTGCCCACACGCCCCGTGTGTCTGCCCGTTCGACGGCTGCAACTACCAGGGAC
ACTTGCTGTACAGCCACATCCAGGACGAACACGCCACGGACGCCGCCGTCGTCGCCACAGGCTGTCTCCGGGGCACCGGC
ACCACCGTGACGCTGCACAAGAGCAAGCCGTTCCACGTGCTCCTCCACCGCGGCGGCAGCCGCGTCTTCCTCCTGCTCAA
CGGCGACAACGTCCTGTCGGGCCGCTCGCTGTCGCTGGTCTGCATCAGCCCTCCTCCCCCGTTGCCCAACTGCGAGCTGC
TGTACAAGATTGAGCTTGGCGCCGTGTCGCGGGCCCCCGGCGAGCTCGGTCTGTCCATGTCGGGTACCGTCCCGTGCGTC
CGCCGGCTGGAGGGGTTCGACGCGAAGGCGTTCCTGTTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis