Browse Element(s) Details


OsAffx.4280.2.S1_at

Description tigr:9633.m00794
TID=OsAffx.4280.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0891011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4280.2.S1_at--68--3351Chr05:4913022..4913046 (25 bp)
CACGGTCACCGTCGTTGAGAACCAA
LOC_Os05g08910
OsAffx.4280.2.S1_at--310--7091Chr05:4913018..4913042 (25 bp)
GTCACCGTCGTTGAGAACCAAGAAG
LOC_Os05g08910
OsAffx.4280.2.S1_at--52--8911Chr05:4913007..4913031 (25 bp)
TGAGAACCAAGAAGTAGAGGCCACC
LOC_Os05g08910
OsAffx.4280.2.S1_at--979--1851Chr05:4912978..4913002 (25 bp)
ACGACGGTGGCGGTCATGGCCCAGA
LOC_Os05g08910
OsAffx.4280.2.S1_at--921--7112Chr08:8266028..8266368 (25 bp)
GTCATGGCCCAGACGGCGACGGCCA
NONE
OsAffx.4280.2.S1_at--845--711Chr05:4912930..4912954 (25 bp)
ATGATCCGGGCAACCCTGTAAGCAA
LOC_Os05g08910
OsAffx.4280.2.S1_at--219--9251Chr05:4912926..4912950 (25 bp)
TCCGGGCAACCCTGTAAGCAAACAA
LOC_Os05g08910
OsAffx.4280.2.S1_at--485--2731Chr05:4912911..4912935 (25 bp)
AAGCAAACAAGCAGCTGAGCACAGT
LOC_Os05g08910
OsAffx.4280.2.S1_at--362--8911Chr05:4912896..4912920 (25 bp)
TGAGCACAGTGGACAGCGCCCATGC
LOC_Os05g08910
OsAffx.4280.2.S1_at--992--1031Chr05:4912756..4912780 (25 bp)
AGGTCCCATGGATCGTGGCGCGCCC
LOC_Os05g08910
OsAffx.4280.2.S1_at--238--9191Chr05:4912731..4912755 (25 bp)
TGCCGGCCGTCTGGACGAAGGCGCA
LOC_Os05g08910
Target Sequence 
CACGGTCACCGTCGTTGAGAACCAAGAAGTAGAGGCCACCGGCGACGACGGTGGCGGTCATGGCCCAGACGGCGACGGCC
ATGGCGGCCGGCATGATCCGGGCAACCCTGTAAGCAAACAAGCAGCTGAGCACAGTGGACAGCGCCCATGCCGCTCGCTG
CAGACACCGGCGATCGTCGGCGGGCGACTCCGGCGTGAGGCGCTCGGCGCGGCGGAGGACGACGAAGAGCGCCGCGAGGC
TGGCGTAGGCGGCGACGACGAAGGCGAGGTCCCATGGATCGTGGCGCGCCCTGCCGGCCGTCTGGACGAAGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4280.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis