Browse Element(s) Details


Os.54503.1.A1_at

Description gb:AK105462.1
DB_XREF= gi:32990671
TID=Os.54503.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-F11, full insert sequence.
FL= gb:AK105462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g089605/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g063005/11Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009650biological_processUV protection
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0008691molecular_function3-hydroxybutyryl-CoA dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54503.1.A1_at--717--8573Chr11:17581111..17581135 (25 bp)
TGGGATCAAATTCACGAGGTCGAGA
NONE
Os.54503.1.A1_at--233--7871Chr06:14972751..14972775 (25 bp)
GGTATTTTCGTGTTGATTTTGGTTG
NONE
Os.54503.1.A1_at--1013--6592Chr12:4813066..4813086 (21 bp)
GATTGATTTGGAGATCTAGCTCAGA
NONE
Os.54503.1.A1_at--66--2154Chr12:4813108..4813132 (25 bp)
ACAGACTCGGACTCAAACGATTGGG
NONE
Os.54503.1.A1_at--520--3951Chr06:14972639..14972663 (25 bp)
CGGACGATCCGTGTTGATTTTGGTT
NONE
Os.54503.1.A1_at--90--10411Chr06:14972434..14972458 (25 bp)
TTTTGTAATTTTTTGCCGCTTTCTG
NONE
Os.54503.1.A1_at--704--10316Chr06:8231507..8231531 (25 bp)
TTTCTGCACTGTTCAGTGCCACATA
NONE
Os.54503.1.A1_at--997--7275Chr05:4937846..4937870 (25 bp)
GTGCCACATATACATGCCAGCATGG
LOC_Os05g08960
Os.54503.1.A1_at--579--836Chr06:8231543..8231567 (25 bp)
ATGGACCAGGCACACGAAATGACTA
NONE
Os.54503.1.A1_at--841--4056Chr06:8231557..8231581 (25 bp)
CGAAATGACTAATCTACCCTTGTTA
NONE
Os.54503.1.A1_at--798--3716Chr06:8231570..8231594 (25 bp)
CTACCCTTGTTAGTAATGTCTGTAA
NONE
Target Sequence 
TGGGATCAAATTCACGAGGTCGAGATTAAATTTGGTATTTTCGTGTTGATTTTGGTTGTTCGGTTTATTGATTGATTTGG
AGATCTAGCTCAGATTTTTTTTGAAGACAGACTCGGACTCAAACGATTGGGAGGAACGGATCGCACGGACGATCCGTGTT
GATTTTGGTTGTTCGGTTGATTGATTGAGTTGGGAATCTAGCTCGGGGATTTTTTTTGAAGACAGACTNGGACTCAAACG
ATTGGGAGGAACGGATTGGAAATTTAACTATTTGCCACTTTTAGGTTTGGCAATTANNNNAATNCCCTTCTTNGNTTTGC
NNTTAAGAATTCTNCANTGGNGAGAGAAGCNTTTTGTAATTTTTTGCCGCTTTCTGCACTGTTCAGTGCCACATATACAT
GCCAGCATGGACCAGGCACACGAAATGACTAATCTACCCTTGTTAGTAATGTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54503.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis