Browse Element(s) Details


Os.54219.1.S1_at

Description gb:AK102592.1
DB_XREF= gi:32987801
TID=Os.54219.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098G02, full insert sequence.
FL= gb:AK102592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0897011/11Structure-specific recognition protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein
LOC_Os05g09010Os.40360.1.S1_at9/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.2.S1_x_at7/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40360.1.S1_x_at6/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.5.S1_x_at3/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.4.S1_x_at2/115+4970285..4973033hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54219.1.S1_at--1090--551Chr05:4948434..4948458 (25 bp)
ATCCGGAGCTGGCTACCACAGAGAT
LOC_Os05g08970
Os.54219.1.S1_at--353--5391Chr05:4948603..4948627 (25 bp)
GAAGCAGCCATACGTCGAGCAGTCT
LOC_Os05g08970
Os.54219.1.S1_at--800--31Chr05:4948733..4948757 (25 bp)
ATTGCATTCCAGATTACCCTTAGTC
LOC_Os05g08970
Os.54219.1.S1_at--1075--991Chr05:4948774..4948798 (25 bp)
AGGATACGGCTAGTGGCATCTCTAT
LOC_Os05g08970
Os.54219.1.S1_at--772--491Chr05:4948845..4948869 (25 bp)
ATCGTAGGTATCTTTCGAGTCCCGT
LOC_Os05g08970
Os.54219.1.S1_at--325--4071Chr05:4948860..4948884 (25 bp)
CGAGTCCCGTTCTATGAGTGTCTTA
LOC_Os05g08970
Os.54219.1.S1_at--1145--8871Chr05:4948874..4948898 (25 bp)
TGAGTGTCTTATCGCTTTATCTTAG
LOC_Os05g08970
Os.54219.1.S1_at--931--1191Chr05:4948922..4948946 (25 bp)
AGTATAGTAGAGTTCTTCCCGCCAT
LOC_Os05g08970
Os.54219.1.S1_at--432--10411Chr05:4948947..4948971 (25 bp)
TTATGCTGGCCGGATAACTTACCTT
LOC_Os05g08970
Os.54219.1.S1_at--187--3671Chr05:4948964..4948988 (25 bp)
CTTACCTTCACCTATGTAGCAGCAA
LOC_Os05g08970
Os.54219.1.S1_at--140--7431Chr05:4949025..4949049 (25 bp)
GTGTTCTAGCTGGAGAATCACCTCT
LOC_Os05g08970
Target Sequence 
ATCCGGAGCTGGCTACCACAGAGATTGCGAAGAAGCTTGGGGAGAGGTGGCAAAAGATGACAGCCGAGGAGAAGCAGCCA
TACGTCGAGCAGTCTCAAGTTGACAAGAAGCGCTACGCGGAGGAGTCAGCCGCCTACCGCGGGGCGGCTGCCATGGATGT
GGACTCCGGCCCTGCTTCGGACTGAAGAGAAGAGACCTGAATTGCATTCCAGATTACCCTTAGTCTAGGAGGGCGACAGA
CAGGATACGGCTAGTGGCATCTCTATTTCCATGTAAATAAAACTTATGAGTTATCTGGATGTAAATAAAACTATCGTAGG
TATCTTTCGAGTCCCGTTCTATGAGTGTCTTATCGCTTTATCTTAGCTATATATATAGATAGCAGCTATAGTATAGTAGA
GTTCTTCCCGCCATTTATGCTGGCCGGATAACTTACCTTCACCTATGTAGCAGCAATAAGCATGCTTATCTGCTTAGTTA
AATTATAAATGCGTGTTCTAGCTGGAGAATCACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis