Browse Element(s) Details


Os.53159.1.S1_s_at

Description gb:AK071095.1
DB_XREF= gi:32981118
TID=Os.53159.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079N14, full insert sequence.
FL= gb:AK071095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0893011/11chloroplast lumen common family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53159.1.S1_s_at--925--2311Chr05:4917019..4917043 (25 bp)
AAAGGGTTCCAGAAGAGCGCAACAT
LOC_Os05g08930
Os.53159.1.S1_s_at--1003--2691Chr05:4916993..4917017 (25 bp)
AAGCTTTTGATTGCTCAGATGCATG
LOC_Os05g08930
Os.53159.1.S1_s_at--1033--1291Chr05:4916909..4917001 (25 bp)
AGATGCATGTTGTCAAGGGCCAGTT
LOC_Os05g08930
Os.53159.1.S1_s_at--317--711Chr05:4916849..4916873 (25 bp)
ATGAGGATCCTCGAGATTTCCGACC
LOC_Os05g08930
Os.53159.1.S1_s_at--818--7071Chr05:4916646..4916670 (25 bp)
GTCTTGTTCCAGATGAATTTCCAGA
LOC_Os05g08930
Os.53159.1.S1_s_at--548--7391Chr05:4916607..4916631 (25 bp)
GTGATGTTATACAAGCAGCCAGAGT
LOC_Os05g08930
Os.53159.1.S1_s_at--594--9191Chr05:4916578..4916602 (25 bp)
TCCAAGGACCGGCTACAAAAGGATT
LOC_Os05g08930
Os.53159.1.S1_s_at--328--7931Chr05:4916517..4916541 (25 bp)
GGATTTTTCTACACCTGAACGGCTA
LOC_Os05g08930
Os.53159.1.S1_s_at--201--7851Chr05:4916474..4916498 (25 bp)
GGTAGCTGCATATTGATGTGCACAC
LOC_Os05g08930
Os.53159.1.S1_s_at--356--6031Chr05:4916399..4916423 (25 bp)
GAGATGTGTATCTCCTACCACCAAT
LOC_Os05g08930
Os.53159.1.S1_s_at--1092--3711Chr05:4916385..4916409 (25 bp)
CTACCACCAATTTTCTCCTAACATT
LOC_Os05g08930
Target Sequence 
AAAGGGTTCCAGAAGAGCGCAACATTAAGCTTTTGATTGCTCAGATGCATGTTGTCAAGGGCCAGTTGGATGTTGCATCA
GAGAAACTGCAAAATCTTATCAATGAGGATCCTCGAGATTTCCGACCTCATCTTTGCCAGGGCATCGTTTACGCACTTTT
AGACAAAAAGGAAGAAGCAGATGAGCTGTTTGATACATATAGAAGTCTTGTTCCAGATGAATTTCCAGACAAGAGTTTTA
TTAGTGATGTTATACAAGCAGCCAGAGTGGAGTCCAAGGACCGGCTACAAAAGGATTTTGGATCTGAATTTTTATCTAAG
AAGTGACTAATCAGGATTTTTCTACACCTGAACGGCTAATAGTTTTTGTAGTGGTAGGTAGCTGCATATTGATGTGCACA
CAAGTGCAAAAATGTTACAAGTGAATTGAAATAAATAGTGAGAAATGGAAGGAGATGTGTATCTCCTACCACCAATTTTC
TCCTAACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53159.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis