Browse Element(s) Details


Os.5717.1.S1_at

Description gb:AK063625.1
DB_XREF= gi:32973643
TID=Os.5717.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E12, full insert sequence.
FL= gb:AK063625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4317011/11Caleosin related protein, expressed
LOC_Os05g089601/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g43230Os.54245.1.S1_at11/114+25361853..25363998expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009269biological_processresponse to desiccation
GO:0009650biological_processUV protection
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5717.1.S1_at--839--4471Chr04:25335920..25335944 (25 bp)
GCCTGTTCGAGTACGTGGCGATGCA
LOC_Os04g43170
Os.5717.1.S1_at--972--1551Chr04:25335864..25335888 (25 bp)
AGCTTAGTTAGCTACTGGATCGGTC
LOC_Os04g43170
Os.5717.1.S1_at--885--10451Chr04:25335857..25335881 (25 bp)
TTAGCTACTGGATCGGTCTGTGGGT
LOC_Os04g43170
Os.5717.1.S1_at--463--7731Chr04:25335835..25335859 (25 bp)
GGTGTGAGATCGAGCCTGTGACGCA
LOC_Os04g43170
Os.5717.1.S1_at--733--9171Chr04:25335790..25335814 (25 bp)
TGCCTGCCGGCTTAGGTCTGGTGTT
LOC_Os04g43170
Os.5717.1.S1_at--724--1031Chr04:25335777..25335801 (25 bp)
AGGTCTGGTGTTCTCTCTGGACTCT
LOC_Os04g43170
Os.5717.1.S1_at--1019--9431Chr04:25335762..25335786 (25 bp)
TCTGGACTCTGGGTGATAACAAAAG
LOC_Os04g43170
Os.5717.1.S1_at--519--1431Chr04:25335739..25335763 (25 bp)
AGAACACCCAGATGCGTGTCGTGTC
LOC_Os04g43170
Os.5717.1.S1_at--895--7452Chr05:4942753..4942781 (23 bp)
GTGTCGTGTCTGCTTGTAATTAACT
LOC_Os05g08960
Os.5717.1.S1_at--859--7071Chr04:25335709..25335733 (25 bp)
GTAATTAACTTTGTATCTTGATGCA
LOC_Os04g43170
Os.5717.1.S1_at--621--351Chr04:25335672..25335696 (25 bp)
ATAACGTGTGGAGGATGCGATATGC
LOC_Os04g43170
Target Sequence 
GCCTGTTCGAGTACGTGGCGATGCAGCGGGAGCAGCACGCTAAGANTGTCCTAGATTAGCTTAGTTAGCTACTGGATCGG
TCTGTGGGTGTGAGATCGAGCCTGTGACGCAGGGGACATGCAACGGTGCTCTGCCTGCCGGCTTAGGTCTGGTGTTCTCT
CTGGACTCTGGGTGATAACAAAAGAACACCCAGATGCGTGTCGTGTCTGCTTGTAATTAACTTTGTATCTTGATGCAAGA
GAAATAAGAATAACGTGTGGAGGATGCGATATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis