Browse Element(s) Details


Os.20709.1.S1_at

Description gb:AK072655.1
DB_XREF= gi:32982678
TID=Os.20709.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134D07, full insert sequence.
FL= gb:AK072655.1 gb:AK103972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4314010/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
GO:0017151molecular_functionDEAD/H-box RNA helicase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20709.1.S1_at--963--5431NONE
GAACCTCCAGAAGCTTCAACAGGAT
NONE
Os.20709.1.S1_at--149--211Chr04:25317215..25317239 (25 bp)
ATTTGAGTGAGCTCTTGCAACGCCC
LOC_Os04g43140
Os.20709.1.S1_at--679--8611Chr04:25317058..25317082 (25 bp)
TGGTGTTTCACCGTTACTTCAAAAG
LOC_Os04g43140
Os.20709.1.S1_at--1078--6371Chr04:25316972..25316996 (25 bp)
GATCCCGATTTGTTGTTATTGGTCA
LOC_Os04g43140
Os.20709.1.S1_at--947--271Chr04:25316940..25316964 (25 bp)
ATAGAACCCTTGCAAGCTCTTCAGA
LOC_Os04g43140
Os.20709.1.S1_at--957--7476Chr11:1009501..1009940 (25 bp)
GTGTGTGTGAGCATTGACAAGCAAA
NONE
Os.20709.1.S1_at--248--2591Chr04:25316395..25316419 (25 bp)
AACGTTGTCCAACTACTCATCATTG
LOC_Os04g43140
Os.20709.1.S1_at--10--8251Chr04:25316368..25316392 (25 bp)
GGCACTACATTGTTACTGTTGGGAA
LOC_Os04g43140
Os.20709.1.S1_at--933--7671Chr04:25316299..25316323 (25 bp)
GGGTTATAATCAACTGTACCAGCAT
LOC_Os04g43140
Os.20709.1.S1_at--358--5931Chr04:25316267..25316291 (25 bp)
GAGCATCAACTGTGGCATGCATGAT
LOC_Os04g43140
Os.20709.1.S1_at--605--611Chr04:25316251..25316275 (25 bp)
ATGCATGATACCCACCAGTTTATTG
LOC_Os04g43140
Target Sequence 
GAACCTCCAGAAGCTTCAACAGGATTTGAGTGAGCTCTTGCAACGCCCCTTGCAGCCTAAGACTTNTTCGCGGCGCTATT
TAGCTGGGGCTGGTGTTTCACCGTTACTTCAAAAGCAACTGGAAGAGTTGTCCAAAAGGAATGTTAAGGGCAGTGCTAGT
GTAAATGCAAATAAAGGATCCCGATTTGTTGTTATTGGTCAGGATCAAATAGAACCCTTGCAAGCTCTTCAGAATTCTGG
GCAAGAGGTGTGTGTGAGCATTGACAAGCAAAGAGAAAAGCGAAGGCTTGCTGAAAATTGGAGGCGAAAGAAGCAAAAAG
AGAAGAAAAGTACACGAGAGCAAAAGAGAAAGGAGAAGAGGATAGCTAAAGAAAGGGACTAAATGACAACGTTGTCCAAC
TACTCATCATTGTAGGCACTACATTGTTACTGTTGGGAAACAAGTTTTGGGGGTGTTGGATATCATTTTTGCAATTGAAG
ATAGGGTTATAATCAACTGTACCAGCATCATATNTGAGCATCAACTGTGGCATGCATGATACCCACCAGTTTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis