Browse Element(s) Details


OsAffx.14941.4.S1_s_at

Description tigr:9636.m02717
TID=OsAffx.14941.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4543011/11hypothetical protein
LOC_Os04g4310011/11hypothetical protein
LOC_Os08g2749011/11hypothetical protein
LOC_Os03g5761011/11hypothetical protein
LOC_Os08g377901/11Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45420OsAffx.14941.1.S1_s_at11/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.1.S1_at10/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.5.S1_at1/117+27095759..27096876hypothetical protein
LOC_Os07g45430OsAffx.14941.4.S1_s_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45430OsAffx.14941.3.S1_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45440NANA7+27102506..27103796hypothetical protein
LOC_Os07g45450OsAffx.30941.1.S1_x_at11/117+27108260..27109942hypothetical protein
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14941.4.S1_s_at--76--10575Chr04:25302157..25302181 (25 bp)
TTCTTCTGGTCGTCCAGTCGGCTCT
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--163--4214Chr04:25302223..25302247 (25 bp)
CCCCGTGCCTGCCAGTGACTGATGT
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--773--7375Chr04:25302237..25302261 (25 bp)
GTGACTGATGTCCTTGATTCGCCGT
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--301--4175Chr04:25302278..25302639 (25 bp)
CGCCTATGCTGATGGACTCACTATG
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--183--855Chr04:25302626..25302650 (25 bp)
ATGGACTCACTATGGATCACCCTAT
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--516--835Chr04:25302637..25302661 (25 bp)
ATGGATCACCCTATTATGACAACAG
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--716--4175Chr04:25302694..25302718 (25 bp)
CCCTATGAGCAAGCATTACCTGAAA
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--517--9675Chr04:25302738..25302762 (25 bp)
TCACCTCATACGTGCTGTTCATGTT
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--932--3755Chr04:25302742..25302766 (25 bp)
CTCATACGTGCTGTTCATGTTGCTG
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--966--6735Chr04:25302754..25302778 (25 bp)
GTTCATGTTGCTGTCCAGATAGTAA
LOC_Os04g43100
OsAffx.14941.4.S1_s_at--119--1416Chr04:25302833..25302857 (25 bp)
AGACTCGCTCCTTTGCTACTTTTCA
LOC_Os04g43100
Target Sequence 
TTCTTCTGGTCGTCCAGTCGGCTCTCAAGGCCTGGCTGCGGCCCGCCGAGTTTGAGAGCTCGCCTGCCCCGTGCCTGCCA
GTGACTGATGTCCTTGATTCGCCGTCAGTTCCAGCCACTGACGCCTATGCTGATGGACTCACTATGGATCACCCTATTAT
GACAACAGAATTCTGGACATCACATGAGTGCCTTCTTCTTCCCTATGAGCAAGCATTACCTGAAAACATTAGAGTGAAAC
TCCCTCACCTCATACGTGCTGTTCATGTTGCTGTCCAGATAGTAACATGGGTTACCGACCCGATGCATGGTAACACAATG
AAGGCTCCTTGTGGCCTCAAGACTCGCTCCTTTGCTACTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14941.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis