Browse Element(s) Details


OsAffx.22536.1.S1_x_at

Description gb:NM_185946.1
DB_XREF= gi:34898977
GEN=P0427D10.26
TID=OsAffx.22536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative BLE2 protein (P0427D10.26), mRNA.
PROD=putative BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4551011/11hypothetical protein
LOC_Os07g454901/11expressed protein
LOC_Os07g454801/11hypothetical protein
LOC_Os07g454601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45470NANA7+27125684..27127590hypothetical protein
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22536.1.S1_x_at--662--8171Chr07:27151627..27151651 (25 bp)
GGAACTTACAGCTATGATCCGTTAT
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--54--5931Chr07:27151697..27151721 (25 bp)
GAGCATGCTTGGTCTGAGCTCAGCA
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--272--5311Chr07:27151732..27151756 (25 bp)
GAAGGAACTGTCTTACACCCTGCAA
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--268--431Chr07:27152265..27152289 (25 bp)
ATCATTCCTGATGACTTTGCCCAAG
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--327--6211Chr07:27152327..27152351 (25 bp)
GAGGCTTGTTAGTGCCCTTAATGCA
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--1125--691Chr07:27152355..27152379 (25 bp)
ATGAGACCCAGTGCTGATTGTCCCG
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--844--7711Chr07:27152389..27152413 (25 bp)
GGGTGATTGTTCAACACGCCATAAA
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--402--91Chr07:27152428..27152452 (25 bp)
ATTCTCGCTACGCAAATGATTTCCA
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--707--2511Chr07:27152496..27152520 (25 bp)
AACTACAGGTTGTTCTCCGGTGACG
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--174--2971Chr07:27152528..27152552 (25 bp)
AATGGAGCATCGCACAACACTTTCC
LOC_Os07g45510
OsAffx.22536.1.S1_x_at--361--10694Chr07:27152549..27152573 (25 bp)
TTCCACTCTTGTGGCCAGAGCAAAA
LOC_Os07g45510
Target Sequence 
GGAACTTACAGCTATGATCCGTTATGACAAGTACAAATATACAGCAGTGAGTCTGCTGGGGAGTATGTGTGAGCATGCTT
GGTCTGAGCTCAGCAACTCAGACCTGAAGGAACTGTCTTACACCCTGCAAGAGGTGCTAAAAGGAATAATGGATGCAGAA
GGAGCAGAACTAGAGGTCCTTATTGGCTTTAGTTCACATATATGTAAAATCATTCCTGATGACTTTGCCCAAGAATTAGA
GCATAGTCAGATTAAGAAGAAATTTGTAAAGAGGCTTGTTAGTGCCCTTAATGCACATATGAGACCCAGTGCTGATTGTC
CCGGCATCAGGAGGGTGATTGTTCAACACGCCATAAACTTGATGGAGTTCGATTCTCGCTACGCAAATGATTTCCACAAA
TGCCTATCAATGGTAGAGAACACATCGACAAGGTTAGAAAACTACAGGTTGTTCTCCGGTGACGTAGGACTAATGGAGCA
TCGCACAACACTTTCCACTCTTGTGGCCAGAGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22536.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis