Browse Element(s) Details


Os.32803.2.S1_at

Description gb:NM_185954.1
DB_XREF= gi:34898993
GEN=P0427D10.34
TID=Os.32803.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32803 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative BLE2 protein (P0427D10.34), mRNA.
PROD=putative BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4555011/11hypothetical protein
LOC_Os07g460301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45570Os.9778.1.S2_at11/117+27195965..27199716expressed protein
LOC_Os07g45570Os.9778.1.S1_at10/117+27195965..27199716expressed protein
LOC_Os07g45570OsAffx.30966.4.S1_x_at4/117+27195965..27199716expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32803.2.S1_at--174--8191Chr07:27172924..27172948 (25 bp)
GGAACCAGGATATTCATTCATTAGA
LOC_Os07g45550
Os.32803.2.S1_at--529--9691Chr07:27172953..27172977 (25 bp)
TCACTGCCATGATCCGAGATGACAT
LOC_Os07g45550
Os.32803.2.S1_at--947--9851Chr07:27172977..27173001 (25 bp)
TACACAAATACATGGCCGCAAGTCT
LOC_Os07g45550
Os.32803.2.S1_at--1038--8411Chr07:27172990..27173014 (25 bp)
GGCCGCAAGTCTTCTGCAAAATCTA
LOC_Os07g45550
Os.32803.2.S1_at--1135--5472Chr07:27469711..27469735 (25 bp)
GAACTATCTCATTCCTTGCGAAAGG
LOC_Os07g46030
Os.32803.2.S1_at--603--6652Chr07:27173433..27173457 (25 bp)
GTTGCAACAGAACTTGAAGTCCTTA
LOC_Os07g45550
Os.32803.2.S1_at--722--2991Chr07:27173565..27173589 (25 bp)
AATGCAAATGTGAAACCTACTGTCC
LOC_Os07g45550
Os.32803.2.S1_at--55--791Chr07:27173572..27173596 (25 bp)
ATGTGAAACCTACTGTCCACTGTCC
LOC_Os07g45550
Os.32803.2.S1_at--21--8711Chr07:27173585..27173609 (25 bp)
TGTCCACTGTCCCAGGATCAGGAGG
LOC_Os07g45550
Os.32803.2.S1_at--1093--3131Chr07:27173646..27173670 (25 bp)
AATTCTAGTTATGCGAACTGTTTCA
LOC_Os07g45550
Os.32803.2.S1_at--816--831Chr07:27173685..27173709 (25 bp)
ATGGAAGCACTCATGGTGGTAGAAG
LOC_Os07g45550
Target Sequence 
GGAACCAGGATATTCATTCATTAGAGAGCTCACTGCCATGATCCGAGATGACATACACAAATACATGGCCGCAAGTCTTC
TGCAAAATCTATGCTTGCATGCTCAATCCAAGCTCAGCAGCTCAGACTTGACAGAACTATCTCATTCCTTGCGAAAGGTT
TTGGAAAGAATAACTGACACAACAGTTGCAACAGAACTTGAAGTCCTTATTGGCCTTAGTTCACAAATATGCCATGTCGT
TCCTGAAGACTTTGCCCGAGAACTAGAGCATGATCAGATGAAGGAAAGATTTGTGAAGAAACTAGTTGAGGCACTGAATG
CAAATGTGAAACCTACTGTCCACTGTCCCAGGATCAGGAGGGTGATAGTTGAGCAAGTTATATATATGATGGAAAACAAT
TCTAGTTATGCGAACTGTTTCAATGAATGCCAGATGATGGAAGCACTCATGGTGGTAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32803.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis