Browse Element(s) Details


OsAffx.28919.1.S1_at

Description tigr:9635.m04575
TID=OsAffx.28919.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4552011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28919.1.S1_at--343--5531Chr07:27153801..27153825 (25 bp)
GAAAAATGTGACGTACAGCTGATCG
LOC_Os07g45520
OsAffx.28919.1.S1_at--646--4271Chr07:27153756..27153780 (25 bp)
CCTGCAGGCCTATGGAATGACTCAT
LOC_Os07g45520
OsAffx.28919.1.S1_at--430--5011Chr07:27153753..27153777 (25 bp)
GCAGGCCTATGGAATGACTCATATA
LOC_Os07g45520
OsAffx.28919.1.S1_at--664--8951Chr07:27153739..27153763 (25 bp)
TGACTCATATACATTTCGCATCCCT
LOC_Os07g45520
OsAffx.28919.1.S1_at--744--331Chr07:27153731..27153755 (25 bp)
ATACATTTCGCATCCCTGGCGATTA
LOC_Os07g45520
OsAffx.28919.1.S1_at--866--8991Chr07:27153611..27153635 (25 bp)
TGCTCGGTTGTATAACAAGTGGCTT
LOC_Os07g45520
OsAffx.28919.1.S1_at--1049--2891Chr07:27153514..27153538 (25 bp)
AAGGATGAGATCTTTGATAGAGTTA
LOC_Os07g45520
OsAffx.28919.1.S1_at--1017--3811Chr07:27153448..27153472 (25 bp)
CTGTTCCTTCAAGCCAAAATACCAT
LOC_Os07g45520
OsAffx.28919.1.S1_at--267--10511Chr07:27153441..27153465 (25 bp)
TTCAAGCCAAAATACCATGGGCATG
LOC_Os07g45520
OsAffx.28919.1.S1_at--63--811Chr07:27153425..27153449 (25 bp)
ATGGGCATGATACTCGAGAATTAAA
LOC_Os07g45520
OsAffx.28919.1.S1_at--542--9911Chr07:27153415..27153439 (25 bp)
TACTCGAGAATTAAAGACTGCTTTT
LOC_Os07g45520
Target Sequence 
GAAAAATGTGACGTACAGCTGATCGATGGTGCATCATTGATAGGCCCTGCAGGCCTATGGAATGACTCATATACATTTCG
CATCCCTGGCGATTACGGTGCAGTTGACATAACTTTATCACGTCTTCGTTGGGCAGCTGAGGCAACTGTGGAGGTTGTCA
TATCAGAAGTGCAAACCAGTTTCGATTTGTTGCTCGGTTGTATAACAAGTGGCTTGGATAAGGAAATCCGGCTATTTGAT
GGTACCATCACTGAGCCACGTGGGTTAAAGAGGTCGGTGGTTGCTGTAAGGATGAGATCTTTGATAGAGTTAAATTTCAA
AGTAGGCGCACTGTCATCCAGTTTGGACCATTGCTGTTCCTTCAAGCCAAAATACCATGGGCATGATACTCGAGAATTAA
AGACTGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis