Browse Element(s) Details


OsAffx.1528.1.S1_at

Description gb:NM_185949.1
DB_XREF= gi:34898983
GEN=P0427D10.29
TID=OsAffx.1528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) reverse transcriptase-like (P0427D10.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4553011/11retrotransposon protein, putative, unclassified
LOC_Os04g519305/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1528.1.S1_at--283--5331Chr07:27160559..27160583 (25 bp)
GAAGTGGCCCACAGCGATGACGAGC
LOC_Os07g45530
OsAffx.1528.1.S1_at--391--1872Chr04:30594747..30594771 (25 bp)
ACGAGCGGCCGGTCCAGGAAACTGA
LOC_Os04g51930
OsAffx.1528.1.S1_at--643--1632Chr04:30594797..30594821 (25 bp)
AGCGGAGAGATGATGCTCCCACCTC
LOC_Os04g51930
OsAffx.1528.1.S1_at--293--5851Chr07:27160382..27160406 (25 bp)
GACCAGATTCTTCAGGGATTCCTCG
LOC_Os07g45530
OsAffx.1528.1.S1_at--1014--2271Chr07:27160295..27160319 (25 bp)
AAATCCAAGCCTTGTTGGCGCAATG
LOC_Os07g45530
OsAffx.1528.1.S1_at--985--8451Chr07:27160280..27160304 (25 bp)
TGGCGCAATGTGATCCCTGAGTGGT
LOC_Os07g45530
OsAffx.1528.1.S1_at--135--2872Chr04:30595065..30595089 (25 bp)
AAGGGAACGGAGCTCGTCGCCATTC
LOC_Os04g51930
OsAffx.1528.1.S1_at--1043--2672Chr04:30595149..30595173 (25 bp)
AAGCGGATCAAGACACCTTCCAGCA
LOC_Os04g51930
OsAffx.1528.1.S1_at--766--3631Chr07:27160122..27160146 (25 bp)
CTTCCAGCAGAACACTACCGTGATT
LOC_Os07g45530
OsAffx.1528.1.S1_at--430--6591Chr07:27160101..27160125 (25 bp)
GATTGATCAGCCGTTATCGACCCAG
LOC_Os07g45530
OsAffx.1528.1.S1_at--34--952Chr04:30595257..30595281 (25 bp)
AGGAAGCAGATGTTCCACCGCCGGA
LOC_Os04g51930
Target Sequence 
GAAGTGGCCCACAGCGATGACGAGCGGCCGGTCCAGGAAACTGAGATCGAGAGCAGCAGGGAGGCGCTCAGCGGAGAGAT
GATGCTCCCACCTCCCGCCTCGCCGTCGACGGCACTCGCCCGCGCGCGGCCAACCTCGGAGGGGTCGCCGGCGAACACGC
CGCTACCCCCCGAGGCGGACCAGATTCTTCAGGGATTCCTCGCGTCGGTCGCTACTGAGCCTCCCCCCTCCCTGCTCGGG
AGGAGGCCGCCGGAGTCAGTCCCCAAATCCAAGCCTTGTTGGCGCAATGTGATCCCTGAGTGGTTCACGCCGTGGCGCAG
CCCACGTCTGCAACAACAAGGGAACGGAGCTCGTCGCCATTCAACTTCAAAAGCGCAGAAGGTAACGATGAAGAAGATGG
GCATCATTGAAGAGGAAGAAGAAGCGGATCAAGACACCTTCCAGCAGAACACTACCGTGATTGATCAGCCGTTATCGACC
CAGCACATGAAGGTGCTAGCGGAGCTGCTGGATGTGGATGTTGCGCTGGAGGAAGCAGATGTTCCACCGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis