Browse Element(s) Details


Os.9778.1.S1_at

Description gb:AK067435.1
DB_XREF= gi:32977453
TID=Os.9778.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) BLE2 protein (P0427D10.39), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104L16, full insert sequence.
FL= gb:AK098888.1 gb:AK062101.1 gb:AK067435.1 gb:AK067278.1 gb:AB072978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4557010/11expressed protein
LOC_Os07g458801/11retrotransposon protein, putative, unclassified
LOC_Os07g460901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45570Os.9778.1.S2_at11/117+27195965..27199716expressed protein
LOC_Os07g45570Os.9778.1.S1_at10/117+27195965..27199716expressed protein
LOC_Os07g45570OsAffx.30966.4.S1_x_at4/117+27195965..27199716expressed protein
LOC_Os07g45580NANA7+27203562..27204557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45590NANA7+27207879..27211419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45600NANA7+27212170..27213339retrotransposon protein, putative, unclassified
LOC_Os07g45610Os.45173.5.S1_x_at4/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.47999.2.A1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.3.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.1.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9778.1.S1_at--57--7091NONE
GTCAATCATTTATAGCCCTTGCTGG
NONE
Os.9778.1.S1_at--212--311Chr07:27198159..27198178 (20 bp)
ATAGCCCTTGCTGGCTGTGATCAAA
LOC_Os07g45570
Os.9778.1.S1_at--973--2551Chr07:27198204..27198228 (25 bp)
AACTGATCTGATCCCCAATATAATT
LOC_Os07g45570
Os.9778.1.S1_at--347--5332Chr07:27198245..27198269 (25 bp)
GAAGTGCAATGGTAAATTCCGAAGC
LOC_Os07g45570
Os.9778.1.S1_at--670--9611Chr07:27198292..27198316 (25 bp)
TCATCGTTGAAGGTACTGCAGAGGC
LOC_Os07g45570
Os.9778.1.S1_at--486--3631Chr07:27198391..27198415 (25 bp)
CTTGCAGAGATCTTGCGAGACAATA
LOC_Os07g45570
Os.9778.1.S1_at--77--6431Chr07:27198399..27198423 (25 bp)
GATCTTGCGAGACAATAGCAGCAAC
LOC_Os07g45570
Os.9778.1.S1_at--898--8951Chr07:27198474..27198498 (25 bp)
TGACAGACACACAAGGCAAGAGATG
LOC_Os07g45570
Os.9778.1.S1_at--157--851Chr07:27198533..27198557 (25 bp)
AGGCATTCCTCGATTTTAAAGGATT
LOC_Os07g45570
Os.9778.1.S1_at--354--3411Chr07:27198623..27198647 (25 bp)
CAGAAAATTCGCATAACTGCTTTGT
LOC_Os07g45570
Os.9778.1.S1_at--141--5312Chr07:27511782..27511806 (25 bp)
GAAGGAACCAGATTTCATTCATAAA
LOC_Os07g46090
Target Sequence 
GTCAATCATTTATAGCCCTTGCTGGCTGTGATCAAAATAATTGTGTGGAAATAGACAGAGTAACTGATCTGATCCCCAAT
ATAATTGGATTCACAAGCTTCAGAAGTGCAATGGTAAATTCCGAAGCACAACAGAAGGTTCTCTTAAAGTCATCGTTGAA
GGTACTGCAGAGGCTCACAAGCATTGAAGGGGAAATTGGCATAACACTGCGGTACAAGATATCAAAACATCCCTTCTTAC
TGCGAAACCTTGCAGAGATCTTGCGAGACAATAGCAGCAACAAACAAGAACTAAGGAAGCTCGTGGTAGGAATCCTCAGA
AACCTTGCCATTGACAGACACACAAGGCAAGAGATGGGACAAATGCAAATGCTCATTACCACGCTGATCAAGGCATTCCT
CGATTTTAAAGGATTATTTAGTTCAGATGTTGATTGCTTGCTGCCAAAGGTCGCCGGGCAAGCATTGGTAATGCTGTCAT
CAGAAAATTCGCATAACTGCTTTGTTATGTTGAAGGAACCAGATTTCATTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis