Browse Element(s) Details


Os.9778.1.S2_at

Description gb:AB072978.1
DB_XREF= gi:19912030
GEN=OsBLE2
TID=Os.9778.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9778 (NCBI UniGene Cluster)
DEF=Oryza sativa OsBLE2 gene for BLE2 protein, complete cds.
PROD=BLE2 protein
FL= gb:AK098888.1 gb:AK062101.1 gb:AK067435.1 gb:AK067278.1 gb:AB072978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4557011/11expressed protein
LOC_Os07g460608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45570Os.9778.1.S2_at11/117+27195965..27199716expressed protein
LOC_Os07g45570Os.9778.1.S1_at10/117+27195965..27199716expressed protein
LOC_Os07g45570OsAffx.30966.4.S1_x_at4/117+27195965..27199716expressed protein
LOC_Os07g45580NANA7+27203562..27204557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45590NANA7+27207879..27211419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45600NANA7+27212170..27213339retrotransposon protein, putative, unclassified
LOC_Os07g45610Os.45173.5.S1_x_at4/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.47999.2.A1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.3.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.1.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9778.1.S2_at--1019--6291Chr07:27199298..27199322 (25 bp)
GATGATGGATGCACTGTCGTTTGTA
LOC_Os07g45570
Os.9778.1.S2_at--64--7211Chr07:27199313..27199337 (25 bp)
GTCGTTTGTAGAATTGACACCCTCA
LOC_Os07g45570
Os.9778.1.S2_at--982--7092Chr07:27199501..27199525 (25 bp)
GTCAGAAGACCTTGCATATTGTTAG
LOC_Os07g45570
Os.9778.1.S2_at--7--5852Chr07:27199508..27199532 (25 bp)
GACCTTGCATATTGTTAGTGCAGGG
LOC_Os07g45570
Os.9778.1.S2_at--604--2313Chr07:27505531..27505555 (25 bp)
AAAGTGATTCTGCATTTACAGTCAG
NONE
Os.9778.1.S2_at--533--2132Chr07:27489287..27489311 (25 bp)
ACAGTCAGAAGACAACGCATGTTGC
LOC_Os07g46060
Os.9778.1.S2_at--852--5612Chr07:27489297..27489321 (25 bp)
GACAACGCATGTTGCTAGAAAGAAC
LOC_Os07g46060
Os.9778.1.S2_at--224--8914Chr07:27489340..27489364 (25 bp)
TGAGCAAAGGGTATTGTATCTGTAC
LOC_Os07g46060
Os.9778.1.S2_at--673--9613Chr07:27199634..27199658 (25 bp)
TCATGAATCTTGCACTGTAATCTGT
LOC_Os07g45570
Os.9778.1.S2_at--967--3873Chr07:27505641..27505665 (25 bp)
CTGTAATCTGTGTGCTATTGATGAT
NONE
Os.9778.1.S2_at--720--8834Chr07:27531880..27531904 (25 bp)
TGATTTATCCAATTATCATTTGTTG
NONE
Target Sequence 
GATGATGGATGCACTGTCGTTTGTAGAATTGACACCCTCAAGGGCTGAGAATTACATGGTTTTCTTGGGTGACGCAGGTT
TCATGGAATGTAACACACCTCTCTCTGCCCTAGTGGACAGGGCAAAAGAACTGATGGGTCGTCAGTGGCTGCAAGGTATC
ANCAGTGCCAACTGAAAAAAAAAATAAAATGNTTTTGCATATANNCAGTCAGAAGACCTTGCATATTGTTAGTGCAGGGN
ANACAAAGTGATTCTGCATTTACAGTCAGAAGACAACGCATGTTGCTAGAAAGAACATATATTTACCTTTAAGATGAGCA
AAGGGTATTGTATCTGTACNTCATGAATCTTGCACTGTAATCTGTGTGCTATTGATGATTTATCCAATTATCATTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9778.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis