Browse Element(s) Details


OsAffx.30966.4.S1_x_at

Description tigr:9635.m04629
TID=OsAffx.30966.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4606011/11expressed protein
LOC_Os07g460805/11hypothetical protein
LOC_Os07g455704/11expressed protein
LOC_Os07g461302/11expressed protein
LOC_Os07g359602/11expressed protein
LOC_Os07g460901/11expressed protein
LOC_Os07g457601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46020Os.41695.15.S1_s_at11/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.2.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.3.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.5.S1_x_at9/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46030Os.32803.2.S1_at1/117+27467151..27470735expressed protein
LOC_Os07g46040Os.31644.3.S1_at3/117+27471744..27480437hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_x_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46060OsAffx.30966.4.S1_x_at11/117+27484876..27489453expressed protein
LOC_Os07g46060OsAffx.30966.4.S1_at10/117+27484876..27489453expressed protein
LOC_Os07g46060Os.9778.1.S2_at8/117+27484876..27489453expressed protein
LOC_Os07g46070OsAffx.28924.2.S1_at11/117+27494320..27496001hypothetical protein
LOC_Os07g46080OsAffx.30966.4.S1_x_at5/117+27500142..27505460hypothetical protein
LOC_Os07g46090OsAffx.30966.4.S1_x_at1/117+27508311..27512614expressed protein
LOC_Os07g46090Os.9778.1.S1_at1/117+27508311..27512614expressed protein
LOC_Os07g46100OsAffx.16731.1.S1_at11/117+27513445..27514716hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30966.4.S1_x_at--567--5552Chr07:27488155..27488179 (25 bp)
GAAACCTTGCCATTGACAGAGACAC
LOC_Os07g46060
OsAffx.30966.4.S1_x_at--745--5131Chr07:27488201..27488225 (25 bp)
GCAAATGCTCATTACCATGCTGATG
LOC_Os07g46060
OsAffx.30966.4.S1_x_at--275--931Chr07:27488227..27488251 (25 bp)
AGGCATTCCTCGATTCTAGCAGATC
LOC_Os07g46060
OsAffx.30966.4.S1_x_at--719--3231Chr07:27488295..27488771 (25 bp)
CAAGCACTGGTGTTGGAACGAATAA
LOC_Os07g46060
OsAffx.30966.4.S1_x_at--323--573Chr07:27199068..27199092 (25 bp)
ATCCTCATTGGCCTTAGTTCACAGA
LOC_Os07g45570
OsAffx.30966.4.S1_x_at--288--5212Chr07:27488843..27488867 (25 bp)
GAATTTTCCCAAGAGCTAGAGCATG
LOC_Os07g46060
OsAffx.30966.4.S1_x_at--203--9293Chr07:27505207..27505231 (25 bp)
TCCGGAGGGTGGTACTTGAGCAATC
LOC_Os07g46080
OsAffx.30966.4.S1_x_at--993--8032Chr07:27505244..27505268 (25 bp)
GGAGTACAATTCTCACTATGCCAAT
LOC_Os07g46080
OsAffx.30966.4.S1_x_at--881--6294Chr07:27531509..27531533 (25 bp)
GATGATGGACGCACTGTCAATTGTA
LOC_Os07g46130
OsAffx.30966.4.S1_x_at--963--9873Chr07:27505338..27505362 (25 bp)
TACATGGTTTTCTTGGGTGACACAG
LOC_Os07g46080
OsAffx.30966.4.S1_x_at--319--855Chr07:27512522..27512546 (25 bp)
ATGGAATGTAACACACCTCTCTCTG
LOC_Os07g46090
Target Sequence 
GAAACCTTGCCATTGACAGAGACACAAGGCAGGAGATTGGACAAATGCAAATGCTCATTACCATGCTGATGAAGGCATTC
CTCGATTCTAGCAGATCATTTAGTTCAAATGTTGATTGCTTGTTGCCAAAGGTCGCCGGGCAAGCACTGGTGTTGGAACG
AATAATGGACGCTGAAGGGGCAGAACTAGAAATCCTCATTGGCCTTAGTTCACAGATATGCAAACTCATTCCTGAAGAAT
TTTCCCAAGAGCTAGAGCATGGACAGATTAAGCGGAGATTCATTAAGAGGCTAGTGGACACACTGAATGCAAACATGAAC
CCAAGTTCTCATTGCCCTGGGATCCGGAGGGTGGTACTTGAGCAATCCATATACATGATGGAGTACAATTCTCACTATGC
CAATTGTTTCAATGAATACCAGATGATGGACGCACTGTCAATTGTAGAATTGACGCCCTCAAGGGCTGAGAATTACATGG
TTTTCTTGGGTGACACAGGTTTCATGGAATGTAACACACCTCTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30966.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis