Browse Element(s) Details


OsAffx.16731.1.S1_at

Description tigr:9635.m04633
TID=OsAffx.16731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4610011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46060OsAffx.30966.4.S1_x_at11/117+27484876..27489453expressed protein
LOC_Os07g46060OsAffx.30966.4.S1_at10/117+27484876..27489453expressed protein
LOC_Os07g46060Os.9778.1.S2_at8/117+27484876..27489453expressed protein
LOC_Os07g46070OsAffx.28924.2.S1_at11/117+27494320..27496001hypothetical protein
LOC_Os07g46080OsAffx.30966.4.S1_x_at5/117+27500142..27505460hypothetical protein
LOC_Os07g46090OsAffx.30966.4.S1_x_at1/117+27508311..27512614expressed protein
LOC_Os07g46090Os.9778.1.S1_at1/117+27508311..27512614expressed protein
LOC_Os07g46100OsAffx.16731.1.S1_at11/117+27513445..27514716hypothetical protein
LOC_Os07g46110NANA7+27516367..27519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.47463.1.S1_x_at5/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.14491.2.S1_x_at4/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46130OsAffx.30966.4.S1_x_at2/117+27526858..27531683expressed protein
LOC_Os07g46140Os.35344.18.S1_x_at9/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140Os.35344.3.S1_x_at8/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140OsAffx.22940.5.S1_x_at3/117+27534488..27540516Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16731.1.S1_at--809--751Chr07:27513877..27513901 (25 bp)
ATGTCACGTCAAATGAATACCAGGT
LOC_Os07g46100
OsAffx.16731.1.S1_at--602--5231Chr07:27513642..27513887 (25 bp)
GAATACCAGGTAGGCTACACTGCGG
LOC_Os07g46100
OsAffx.16731.1.S1_at--252--311Chr07:27513640..27513885 (25 bp)
ATACCAGGTAGGCTACACTGCGGCC
LOC_Os07g46100
OsAffx.16731.1.S1_at--730--7851Chr07:27513634..27513658 (25 bp)
GGTAGGCTACACTGCGGCCCGCTGC
LOC_Os07g46100
OsAffx.16731.1.S1_at--191--9151Chr07:27513612..27513636 (25 bp)
TGCCTACTTCGCTTCATACGGCCGA
LOC_Os07g46100
OsAffx.16731.1.S1_at--989--9871Chr07:27513608..27513632 (25 bp)
TACTTCGCTTCATACGGCCGAAAAG
LOC_Os07g46100
OsAffx.16731.1.S1_at--1036--9571Chr07:27513599..27513623 (25 bp)
TCATACGGCCGAAAAGCCGTGTCTT
LOC_Os07g46100
OsAffx.16731.1.S1_at--489--8411Chr07:27513593..27513617 (25 bp)
GGCCGAAAAGCCGTGTCTTCCTCGA
LOC_Os07g46100
OsAffx.16731.1.S1_at--1062--5511Chr07:27513589..27513613 (25 bp)
GAAAAGCCGTGTCTTCCTCGACCAG
LOC_Os07g46100
OsAffx.16731.1.S1_at--714--9371Chr07:27513572..27513596 (25 bp)
TCGACCAGCCTACGGCGATGGCGAT
LOC_Os07g46100
OsAffx.16731.1.S1_at--568--691Chr07:27513549..27513573 (25 bp)
ATGAGGCGACGAGCTAGGCGTGACG
LOC_Os07g46100
Target Sequence 
ATGTCACGTCAAATGAATACCAGGTAGGCTACACTGCGGCCCGCTGCCTACTTCGCTTCATACGGCCGAAAAGCCGTGTC
TTCCTCGACCAGCCTACGGCGATGGCGATGAGGCGACGAGCTAGGCGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis