Browse Element(s) Details


OsAffx.30966.4.S1_at

Description tigr:9635.m04629
TID=OsAffx.30966.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4606010/11expressed protein
LOC_Os07g457601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46020Os.41695.15.S1_s_at11/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.2.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.3.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.5.S1_x_at9/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46030Os.32803.2.S1_at1/117+27467151..27470735expressed protein
LOC_Os07g46040Os.31644.3.S1_at3/117+27471744..27480437hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_x_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46060OsAffx.30966.4.S1_x_at11/117+27484876..27489453expressed protein
LOC_Os07g46060OsAffx.30966.4.S1_at10/117+27484876..27489453expressed protein
LOC_Os07g46060Os.9778.1.S2_at8/117+27484876..27489453expressed protein
LOC_Os07g46070OsAffx.28924.2.S1_at11/117+27494320..27496001hypothetical protein
LOC_Os07g46080OsAffx.30966.4.S1_x_at5/117+27500142..27505460hypothetical protein
LOC_Os07g46090OsAffx.30966.4.S1_x_at1/117+27508311..27512614expressed protein
LOC_Os07g46090Os.9778.1.S1_at1/117+27508311..27512614expressed protein
LOC_Os07g46100OsAffx.16731.1.S1_at11/117+27513445..27514716hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30966.4.S1_at--274--931Chr07:27488227..27488251 (25 bp)
AGGCATTCCTCGATTCTAGCAGATC
LOC_Os07g46060
OsAffx.30966.4.S1_at--154--8291Chr07:27488228..27488252 (25 bp)
GGCATTCCTCGATTCTAGCAGATCA
LOC_Os07g46060
OsAffx.30966.4.S1_at--345--4951Chr07:27488229..27488253 (25 bp)
GCATTCCTCGATTCTAGCAGATCAT
LOC_Os07g46060
OsAffx.30966.4.S1_at--482--91Chr07:27488231..27488255 (25 bp)
ATTCCTCGATTCTAGCAGATCATTT
LOC_Os07g46060
OsAffx.30966.4.S1_at--964--9251Chr07:27488233..27488257 (25 bp)
TCCTCGATTCTAGCAGATCATTTAG
LOC_Os07g46060
OsAffx.30966.4.S1_at--423--3791Chr07:27488235..27488259 (25 bp)
CTCGATTCTAGCAGATCATTTAGTT
LOC_Os07g46060
OsAffx.30966.4.S1_at--140--6531Chr07:27488238..27488262 (25 bp)
GATTCTAGCAGATCATTTAGTTCAA
LOC_Os07g46060
OsAffx.30966.4.S1_at--831--5032Chr07:27488245..27488269 (25 bp)
GCAGATCATTTAGTTCAAATGTTGA
LOC_Os07g46060
OsAffx.30966.4.S1_at--343--5171Chr07:27488294..27488770 (25 bp)
GCAAGCACTGGTGTTGGAACGAATA
LOC_Os07g46060
OsAffx.30966.4.S1_at--346--2711Chr07:27488296..27488772 (25 bp)
AAGCACTGGTGTTGGAACGAATAAT
LOC_Os07g46060
OsAffx.30966.4.S1_at--660--1951NONE
ACTGGTGTTGGAACGAATAATGGAC
NONE
Target Sequence 
AGGCATTCCTCGATTCTAGCAGATCATTTAGTTCAAATGTTGATTGCTTGTTGCCAAAGGTCGCCGGGCAAGCACTGGTG
TTGGAACGAATAATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30966.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis