Browse Element(s) Details


OsAffx.22542.1.S1_at

Description gb:NM_185929.1
DB_XREF= gi:34898943
GEN=P0427D10.8
TID=OsAffx.22542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) brassinolide responsible protein-like (P0427D10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4541011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45420OsAffx.14941.1.S1_s_at11/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.1.S1_at10/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.5.S1_at1/117+27095759..27096876hypothetical protein
LOC_Os07g45430OsAffx.14941.4.S1_s_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45430OsAffx.14941.3.S1_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45440NANA7+27102506..27103796hypothetical protein
LOC_Os07g45450OsAffx.30941.1.S1_x_at11/117+27108260..27109942hypothetical protein
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22542.1.S1_at--345--6951Chr07:27083178..27083202 (25 bp)
GTAGCAGAGACTACGGTTGCCCAAC
LOC_Os07g45410
OsAffx.22542.1.S1_at--310--7912Chr07:27083192..27083216 (25 bp)
GGTTGCCCAACCTGAGGCGAGCTGT
LOC_Os07g45410
OsAffx.22542.1.S1_at--64--8891Chr07:27083204..27083228 (25 bp)
TGAGGCGAGCTGTGCATCCCAGCTG
LOC_Os07g45410
OsAffx.22542.1.S1_at--845--3391Chr07:27083223..27083247 (25 bp)
CAGCTGCCTAACACGGCACCGGAAA
LOC_Os07g45410
OsAffx.22542.1.S1_at--38--2731Chr07:27083247..27083271 (25 bp)
AAGCAGCTGAATCTCTTCGTTCGAG
LOC_Os07g45410
OsAffx.22542.1.S1_at--834--9391Chr07:27083263..27083287 (25 bp)
TCGTTCGAGTTGTCGCCTCCGTGGA
LOC_Os07g45410
OsAffx.22542.1.S1_at--608--3311Chr07:27083330..27083354 (25 bp)
CACTGTCGTCCTCCTTGGAGGGTAC
LOC_Os07g45410
OsAffx.22542.1.S1_at--548--8531Chr07:27083345..27083369 (25 bp)
TGGAGGGTACCCGACTAGCGTCAAC
LOC_Os07g45410
OsAffx.22542.1.S1_at--912--5691Chr07:27083357..27083381 (25 bp)
GACTAGCGTCAACTTCGAGGATTTT
LOC_Os07g45410
OsAffx.22542.1.S1_at--1102--4051Chr07:27083372..27083396 (25 bp)
CGAGGATTTTGTGTTCGCCACGACA
LOC_Os07g45410
OsAffx.22542.1.S1_at--1115--7411Chr07:27083382..27083406 (25 bp)
GTGTTCGCCACGACATTGTTCTTCT
LOC_Os07g45410
Target Sequence 
GTAGCAGAGACTACGGTTGCCCAACCTGAGGCGAGCTGTGCATCCCAGCTGCCTAACACGGCACCGGAAAAGCAGCTGAA
TCTCTTCGTTCGAGTTGTCGCCTCCGTGGAGAGGGCGGGCAACGCCCTCGGCACGCTGGCCTTCACCTGGGCCACTGTCG
TCCTCCTTGGAGGGTACCCGACTAGCGTCAACTTCGAGGATTTTGTGTTCGCCACGACATTGTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis