Browse Element(s) Details


OsAffx.14941.3.S1_at

Description tigr:9635.m04566
TID=OsAffx.14941.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4543011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45420OsAffx.14941.1.S1_s_at11/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.1.S1_at10/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.5.S1_at1/117+27095759..27096876hypothetical protein
LOC_Os07g45430OsAffx.14941.4.S1_s_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45430OsAffx.14941.3.S1_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45440NANA7+27102506..27103796hypothetical protein
LOC_Os07g45450OsAffx.30941.1.S1_x_at11/117+27108260..27109942hypothetical protein
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14941.3.S1_at--859--3912Chr10:5366562..5366587 (25 bp)
CGGCCTGGTCACGAGCTTAAGACGA
NONE
OsAffx.14941.3.S1_at--452--4473Chr10:5366564..5366589 (25 bp)
GCCTGGTCACGAGCTTAAGACGACA
NONE
OsAffx.14941.3.S1_at--311--7833Chr10:5366568..5366593 (25 bp)
GGTCACGAGCTTAAGACGACACTGT
NONE
OsAffx.14941.3.S1_at--501--3353Chr10:5366571..5366595 (24 bp)
CACGAGCTTAAGACGACACTGTAGT
NONE
OsAffx.14941.3.S1_at--1027--5911Chr07:27100444..27100468 (25 bp)
GAGCTTAAGACGACACTGTAGTGGG
LOC_Os07g45430
OsAffx.14941.3.S1_at--646--4352Chr09:10446305..10446329 (25 bp)
CCACCTGGCAACTTGGGAGGGACAA
NONE
OsAffx.14941.3.S1_at--627--8492Chr09:10446310..10446334 (25 bp)
TGGCAACTTGGGAGGGACAAAAACA
NONE
OsAffx.14941.3.S1_at--498--5512Chr09:10446325..10446349 (25 bp)
GACAAAAACAAACTTGGGCGGGCTG
NONE
OsAffx.14941.3.S1_at--583--2192Chr09:10446332..10446356 (25 bp)
ACAAACTTGGGCGGGCTGGGCCTCT
NONE
OsAffx.14941.3.S1_at--854--4492Chr09:10446342..10446366 (25 bp)
GCGGGCTGGGCCTCTTGGGCCAAGA
NONE
OsAffx.14941.3.S1_at--796--9551Chr07:27100367..27100391 (25 bp)
TCTTGGGCCAAGAGGCCCACACGGG
LOC_Os07g45430
Target Sequence 
CGGCCTGGTCACGAGCTTAAGACGACACTGTAGTGGGGGCCCACCTGGCAACTTGGGAGGGACAAAAACAAACTTGGGCG
GGCTGGGCCTCTTGGGCCAAGAGGCCCACACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14941.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis