Browse Element(s) Details


OsAffx.14941.5.S1_at

Description tigr:9631.m05655
TID=OsAffx.14941.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative phosphate synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g576109/11hypothetical protein
LOC_Os02g197001/11hypothetical protein
LOC_Os07g454201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14941.5.S1_at--76--151NONE
ATTACTTCTCAGTACTGGAAGGCCA
NONE
OsAffx.14941.5.S1_at--656--10571NONE
TTCTCAGTACTGGAAGGCCATATTG
NONE
OsAffx.14941.5.S1_at--958--6994Chr04:25303708..25303844 (25 bp)
GTACTGGAAGGCCATATTGGTGTAT
NONE
OsAffx.14941.5.S1_at--1105--4435Chr04:25303830..25303854 (25 bp)
GCCATATTGGTGTATGAGAATCTGT
NONE
OsAffx.14941.5.S1_at--1053--5955Chr04:25303845..25303869 (25 bp)
GAGAATCTGTCAAATCCCTATGGAA
NONE
OsAffx.14941.5.S1_at--807--5255Chr04:25303847..25303871 (25 bp)
GAATCTGTCAAATCCCTATGGAATA
NONE
OsAffx.14941.5.S1_at--558--8715Chr04:25303852..25303876 (25 bp)
TGTCAAATCCCTATGGAATAGCGGG
NONE
OsAffx.14941.5.S1_at--690--8515Chr04:25303865..25303889 (25 bp)
TGGAATAGCGGGAACTCTCCTTCAT
NONE
OsAffx.14941.5.S1_at--1065--3095Chr04:25303868..25303892 (25 bp)
AATAGCGGGAACTCTCCTTCATGTC
NONE
OsAffx.14941.5.S1_at--402--1635Chr04:25303871..25303895 (25 bp)
AGCGGGAACTCTCCTTCATGTCCAA
NONE
OsAffx.14941.5.S1_at--468--5973Chr03:32777462..32777599 (25 bp)
GAGAAGCATATGTGGATGTGGTCAT
LOC_Os03g57610
Target Sequence 
ATTACTTCTCAGTACTGGAAGGCCATATTGGTGTATGAGAATCTGTCAAATCCCTATGGAATAGCGGGAACTCTCCTTCA
TGTCCAAGTCTCGCAGTCCTATCTTCCGAAGCCGAAGTTTATTTTCAATGGCGGACATGAACTTTGGGAGTGGAGAAGCA
TATGTGGATGTGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14941.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis