Browse Element(s) Details


Os.54936.1.S1_at

Description gb:AK107136.1
DB_XREF= gi:32992345
TID=Os.54936.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C10, full insert sequence.
FL= gb:AK107136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5764011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57670NANA3+32806571..32807937LOB domain protein 4, putative
LOC_Os03g57680Os.15575.1.S1_at5/113+32808297..32816140Aldehyde oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54936.1.S1_at--187--9431Chr03:32791421..32791445 (25 bp)
TCGTGAGGCGCTTCGTCTACGGCAA
LOC_Os03g57640
Os.54936.1.S1_at--79--4531Chr03:32791474..32791498 (25 bp)
GCCGCGTCCAAGTAAATCCAGCCGA
LOC_Os03g57640
Os.54936.1.S1_at--868--9831Chr03:32791486..32791510 (25 bp)
TAAATCCAGCCGACCAGACACCGAT
LOC_Os03g57640
Os.54936.1.S1_at--752--1411Chr03:32791501..32791525 (25 bp)
AGACACCGATCGCTTTCTGTGGCAT
LOC_Os03g57640
Os.54936.1.S1_at--25--3691Chr03:32791513..32791537 (25 bp)
CTTTCTGTGGCATTGCGTCAGCTGC
LOC_Os03g57640
Os.54936.1.S1_at--497--7111Chr03:32791529..32791553 (25 bp)
GTCAGCTGCCACGTGACAGCATGAG
LOC_Os03g57640
Os.54936.1.S1_at--999--8951Chr03:32791542..32791566 (25 bp)
TGACAGCATGAGACACGCCCCAGTT
LOC_Os03g57640
Os.54936.1.S1_at--83--8411Chr03:32791590..32791614 (25 bp)
GGCCCACCTTGGAAGCCTATTGGAC
LOC_Os03g57640
Os.54936.1.S1_at--544--10851Chr03:32791616..32791640 (25 bp)
TTGGATTTTAACTAGGCCCACTCAT
LOC_Os03g57640
Os.54936.1.S1_at--427--10091Chr03:32791628..32791652 (25 bp)
TAGGCCCACTCATATACGACTTGTA
LOC_Os03g57640
Os.54936.1.S1_at--837--5671Chr03:32791645..32791669 (25 bp)
GACTTGTACCAAACCAATCTTCTCA
LOC_Os03g57640
Target Sequence 
TCGTGAGGCGCTTCGTCTACGGCAACGGCGGTGACGCCGCCGCCGCCGCCGCCGCCGCGTCCAAGTAAATCCAGCCGACC
AGACACCGATCGCTTTCTGTGGCATTGCGTCAGCTGCCACGTGACAGCATGAGACACGCCCCAGTTCCCACCATGTGATA
CACGCCCACGGCCCACCTTGGAAGCCTATTGGACATTGGATTTTAACTAGGCCCACTCATATACGACTTGTACCAAACCA
ATCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis