Browse Element(s) Details


Os.47326.1.S1_at

Description gb:AK106804.1
DB_XREF= gi:32992013
TID=Os.47326.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C02, full insert sequence.
FL= gb:AK106804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5760011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57540NANA3+32749194..32749616hypothetical protein
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47326.1.S1_at--994--6071Chr03:32772299..32772323 (25 bp)
GAGTATGACACCAATGTACCCCATC
LOC_Os03g57600
Os.47326.1.S1_at--1066--3211Chr03:32772223..32772247 (25 bp)
CAAGATCGGGATGGGATCGCCTTCC
LOC_Os03g57600
Os.47326.1.S1_at--727--3451Chr03:32772198..32772222 (25 bp)
CAGTCGGTGCTTACTACTTACTTCA
LOC_Os03g57600
Os.47326.1.S1_at--1069--8651Chr03:32772160..32772184 (25 bp)
TGTGGGAGAATCGTGTCGTCTGCAC
LOC_Os03g57600
Os.47326.1.S1_at--887--4791Chr03:32772096..32772120 (25 bp)
GCTCTGATTTCATAAGTTACCTCCC
LOC_Os03g57600
Os.47326.1.S1_at--216--10471Chr03:32772080..32772104 (25 bp)
TTACCTCCCTCATGATACTCTTTAT
LOC_Os03g57600
Os.47326.1.S1_at--1126--7311Chr03:32772046..32772070 (25 bp)
GTGCTAAGCTCAGTTGTATCCCAAA
LOC_Os03g57600
Os.47326.1.S1_at--1137--2871Chr03:32771774..32771798 (25 bp)
AAGGGAGGCTGCTGGTGACCATTTT
LOC_Os03g57600
Os.47326.1.S1_at--1010--4731Chr03:32771674..32771698 (25 bp)
GCTGTTACACTTGTTCTATCATCTG
LOC_Os03g57600
Os.47326.1.S1_at--390--271Chr03:32771637..32771661 (25 bp)
ATATGTTAATTTATGGCGCTGGCCG
LOC_Os03g57600
Os.47326.1.S1_at--165--3391Chr03:32771611..32771635 (25 bp)
CAGCCGGTTGTGGTATGTTAATCTA
LOC_Os03g57600
Target Sequence 
GAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAG
ATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCT
GCACCCCTCCCTTCTGCATGCAGTTTGGCGCCANTCNTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCT
TTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGNCTGTTATCAGTTCGGCCCTGCAACTGGTTTGG
TATGAAGGGACTNCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCA
TTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTNGACACACATCTNGGTCTTTTATGTGGGAACACTTTGTTAG
CTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGT
TAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis