Browse Element(s) Details


Os.18145.1.S1_x_at

Description gb:AK103648.1
DB_XREF= gi:32988857
TID=Os.18145.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135C17, full insert sequence.
FL= gb:AK103648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5766011/11glutamate carboxypeptidase II, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57670NANA3+32806571..32807937LOB domain protein 4, putative
LOC_Os03g57680Os.15575.1.S1_at5/113+32808297..32816140Aldehyde oxidase 1, putative, expressed
LOC_Os03g57690Os.15575.1.S1_at11/113+32818329..32825391Aldehyde oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009640biological_processphotomorphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0005739cellular_componentmitochondrion
GO:0008233molecular_functionpeptidase activity
GO:0009980molecular_functionglutamate carboxypeptidase activity
GO:0016805molecular_functiondipeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18145.1.S1_x_at--766--4191Chr03:32803885..32803909 (25 bp)
CCCTGTGCTGCCTTTTGATTATCAA
LOC_Os03g57660
Os.18145.1.S1_x_at--853--6531Chr03:32803901..32803925 (25 bp)
GATTATCAAACATACGCTTCCCAGT
LOC_Os03g57660
Os.18145.1.S1_x_at--609--311Chr03:32803912..32803963 (25 bp)
ATACGCTTCCCAGTTGCAGGAGCAT
LOC_Os03g57660
Os.18145.1.S1_x_at--426--5351Chr03:32804350..32804374 (25 bp)
GAAGATCTTTCTGATGCAGGCTTAG
LOC_Os03g57660
Os.18145.1.S1_x_at--889--251Chr03:32804879..32804903 (25 bp)
ATATCCGATGGGTACTCTCTGATGA
LOC_Os03g57660
Os.18145.1.S1_x_at--830--651Chr03:32804900..32804924 (25 bp)
ATGAGGCGGCGATTGTTGAACGACC
LOC_Os03g57660
Os.18145.1.S1_x_at--86--1871Chr03:32804919..32804943 (25 bp)
ACGACCGTCTTCTACTTGCTGAAAG
LOC_Os03g57660
Os.18145.1.S1_x_at--320--4891Chr03:32804946..32804970 (25 bp)
GCTTTCTGCAAGCTGATGGACTTCA
LOC_Os03g57660
Os.18145.1.S1_x_at--1032--471Chr03:32805194..32805214 (21 bp)
ATCTGATGTACTCGCCTCCGGAGGA
LOC_Os03g57660
Os.18145.1.S1_x_at--1076--5931Chr03:32805343..32805367 (25 bp)
GAGCAGCTGATGTTCTTAGAGGCGA
LOC_Os03g57660
Os.18145.1.S1_x_at--128--9551Chr03:32805396..32805420 (25 bp)
TCTAGCCTTTCTGTGGCTCCATAAA
LOC_Os03g57660
Target Sequence 
CCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAGGAGCATGCAAATGCATTCTCTAGTATGATGGAAA
ATAGCAAATGGGTTCATTTGCTGAATAGATCCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAG
AAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGATTGTTGAACGACCGTCTTCTACTTGCTGA
AAGAAGCTTTCTGCAAGCTGATGGACTTCAGGGAAGAGGATGGTTCAAGCATCTGATGTACTCGCCTCCGGAGGACTACG
ANAGCAAGCTCTCGTTTTTCCCTGNGGTGGCGGACGCCATCTCCCGGTCGAGCAATCGAAGCGCGAAAGAACAGCAGGCG
GCGGTGCGGCATGAGGTGCGGAAAATCTCTAGGGCAATCCAAAGAGCAGCTGATGTTCTTAGAGGCGAATTCAGTAATAG
GAACGAATCTTTATACTCTAGCCTTTCTGTGGCTCCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18145.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis