Browse Element(s) Details


OsAffx.25743.1.S1_at

Description tigr:9631.m05657
TID=OsAffx.25743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57670NANA3+32806571..32807937LOB domain protein 4, putative
LOC_Os03g57680Os.15575.1.S1_at5/113+32808297..32816140Aldehyde oxidase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25743.1.S1_at--1103--4571Chr03:32788500..32788524 (25 bp)
GCGACCCCTGGCTGTCGGAGTCGTC
LOC_Os03g57630
OsAffx.25743.1.S1_at--464--9331Chr03:32788428..32788452 (25 bp)
TCGCGCTACCGCAGCTGGGATTAAT
LOC_Os03g57630
OsAffx.25743.1.S1_at--1039--4831Chr03:32788424..32788448 (25 bp)
GCTACCGCAGCTGGGATTAATTCGC
LOC_Os03g57630
OsAffx.25743.1.S1_at--687--7931Chr03:32788411..32788435 (25 bp)
GGATTAATTCGCGTTCAGTTGCTAA
LOC_Os03g57630
OsAffx.25743.1.S1_at--1133--9531Chr03:32788408..32788432 (25 bp)
TTAATTCGCGTTCAGTTGCTAAAAA
LOC_Os03g57630
OsAffx.25743.1.S1_at--431--3311Chr03:32788334..32788358 (25 bp)
CACAGATGGAGCATATGAGCGCGGA
LOC_Os03g57630
OsAffx.25743.1.S1_at--409--4691Chr03:32788305..32788329 (25 bp)
GCGGAGCATGTGGTTCCAAGGTTTT
LOC_Os03g57630
OsAffx.25743.1.S1_at--932--8651Chr03:32788297..32788321 (25 bp)
TGTGGTTCCAAGGTTTTGACGGCGC
LOC_Os03g57630
OsAffx.25743.1.S1_at--564--10571Chr03:32788292..32788316 (25 bp)
TTCCAAGGTTTTGACGGCGCGGAGA
LOC_Os03g57630
OsAffx.25743.1.S1_at--674--1351Chr03:32788270..32788294 (25 bp)
AGAGAGTGGGACGACTCGACCCGAA
LOC_Os03g57630
OsAffx.25743.1.S1_at--1057--4071Chr03:32788259..32788283 (25 bp)
CGACTCGACCCGAACAGGGTGTAAT
LOC_Os03g57630
Target Sequence 
GCGACCCCTGGCTGTCGGAGTCGTCGGCGGATTTCGGCCGGGTGTTCATCTCCGGCGACCAGGCATGGCGTCTCGCGCTA
CCGCAGCTGGGATTAATTCGCGTTCAGTTGCTAAAAAAAATGCCGGTGCTCGGCGGCGATGATGGCGAGACTGCGGCCAC
GGGGAGCACAGATGGAGCATATGAGCGCGGAGGCGGCGGAGCATGTGGTTCCAAGGTTTTGACGGCGCGGAGAGAGTGGG
ACGACTCGACCCGAACAGGGTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis