Browse Element(s) Details


OsAffx.14941.1.S1_s_at

Description tigr:9630.m01881
TID=OsAffx.14941.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5761011/11hypothetical protein
LOC_Os07g4542011/11hypothetical protein
LOC_Os02g1970011/11hypothetical protein
LOC_Os04g431108/11hypothetical protein
LOC_Os08g274808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14941.1.S1_s_at--655--2835Chr04:25304305..25304329 (25 bp)
AAGTTTATTTTCAATGGCGGACATG
NONE
OsAffx.14941.1.S1_s_at--811--10355Chr04:25304312..25304336 (25 bp)
TTTTCAATGGCGGACATGAACTTTG
NONE
OsAffx.14941.1.S1_s_at--987--2955Chr04:25304317..25304341 (25 bp)
AATGGCGGACATGAACTTTGGGAGT
NONE
OsAffx.14941.1.S1_s_at--918--7995Chr04:25304469..25304493 (25 bp)
GGATGTGGTCATATGGATAGTCAAC
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--801--7495Chr04:25304473..25304497 (25 bp)
GTGGTCATATGGATAGTCAACCTCT
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--672--7135Chr04:25304476..25304500 (25 bp)
GTCATATGGATAGTCAACCTCTAAA
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--211--10115Chr04:25304480..25304504 (25 bp)
TATGGATAGTCAACCTCTAAATGAT
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--1118--7935Chr04:25304483..25304507 (25 bp)
GGATAGTCAACCTCTAAATGATACT
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--498--2634Chr04:25304491..25304515 (25 bp)
AACCTCTAAATGATACTACTACTCG
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--1077--2994Chr04:25304499..25304523 (25 bp)
AATGATACTACTACTCGTACTGAAG
LOC_Os04g43110
OsAffx.14941.1.S1_s_at--124--8834Chr04:25304501..25304525 (25 bp)
TGATACTACTACTCGTACTGAAGTA
LOC_Os04g43110
Target Sequence 
AAGTTTATTTTCAATGGCGGACATGAACTTTGGGAGTGGAGNNNAAGCATATGGTAGGTGTTTTGCGCTGCCGCCAGTTG
GAAATATTGGATGTGGTCATATGGATAGTCAACCTCTAAATGATACTACTACTCGTACTGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis