Browse Element(s) Details


OsAffx.30941.1.S1_x_at

Description tigr:9635.m04568
TID=OsAffx.30941.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4545011/11hypothetical protein
LOC_Os09g255109/11transposon protein, putative, unclassified
LOC_Os07g130208/11SWIM zinc finger family protein
LOC_Os11g124908/11transposon protein, putative, unclassified
LOC_Os12g244007/11transposon protein, putative, unclassified
LOC_Os09g084606/11transposon protein, putative, unclassified
LOC_Os05g102805/11transposon protein, putative, unclassified, expressed
LOC_Os06g369704/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45420OsAffx.14941.1.S1_s_at11/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.1.S1_at10/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.5.S1_at1/117+27095759..27096876hypothetical protein
LOC_Os07g45430OsAffx.14941.4.S1_s_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45430OsAffx.14941.3.S1_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45440NANA7+27102506..27103796hypothetical protein
LOC_Os07g45450OsAffx.30941.1.S1_x_at11/117+27108260..27109942hypothetical protein
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45470NANA7+27125684..27127590hypothetical protein
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30941.1.S1_x_at--821--9716Chr12:13915529..13915851 (25 bp)
TCAAGCTGAGATGTGCAGGTCAACA
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--711--6216Chr12:13915614..13915638 (25 bp)
GAGGCTGATGCCTGTTTTGACCAGC
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--125--10756Chr12:13915630..13915654 (25 bp)
TTGACCAGCACTTTGAGCAAGCAAC
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--203--6177Chr12:13915659..13915683 (25 bp)
GAGGATTTATTGTCTGATCATGCAA
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--65--9655Chr09:15299934..15299958 (25 bp)
TCAGAGAGGTGGTCAGGAAGCTAAC
LOC_Os09g25510
OsAffx.30941.1.S1_x_at--107--4855Chr11:6978988..6979012 (25 bp)
GCTAACAGTGCACATGTGCCGTCAA
LOC_Os11g12490
OsAffx.30941.1.S1_x_at--597--7296Chr12:13915836..13915860 (25 bp)
GTGCCGTCAATCAACAAAGTTTTTG
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--590--2691Chr07:27109701..27109725 (25 bp)
AAGCTTTTGACTTCTACAATGGCTA
LOC_Os07g45450
OsAffx.30941.1.S1_x_at--801--637Chr12:13915897..13915921 (25 bp)
ATGCTTATATGGTTGGTTTCTCTAC
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--74--7938Chr12:13915907..13915931 (25 bp)
GGTTGGTTTCTCTACATGCAAAGCT
LOC_Os12g24400
OsAffx.30941.1.S1_x_at--687--411Chr07:27109767..27109791 (25 bp)
ATCATAGCAGGAAAACCGTCGACGG
LOC_Os07g45450
Target Sequence 
TCAAGCTGAGATGTGCAGGTCAACAGTACAATTGAAAGCATCATCTGTAGAAGTGATTTATAATGAAATGCAGACTCAAA
ACATTGAGGCTGATGCCTGTTTTGACCAGCACTTTGAGCAAGCAACAGAAGAGGATTTATTGTCTGATCATGCAATAGTT
ACATTTCAGCAAGTTGAGGAAATAGAACAAGATAAAAGTGCAGAAAATCCAAATCAAAATTTTAGTGAGGAAGATATAAA
CATATTTCTGGAGAATGAAAGTGTAACAGCTGTTCAGAGAGGTGGTCAGGAAGCTAACAGTGCACATGTGCCGTCAATCA
ACAAAGTTTTTGCTGATGAGAATGAAGCTTTTGACTTCTACAATGGCTATGCTTATATGGTTGGTTTCTCTACATGCAAA
GCTAGCAATTATCATAGCAGGAAAACCGTCGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30941.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis