Browse Element(s) Details


Os.36973.1.S1_at

Description gb:AK061964.1
DB_XREF= gi:32971982
TID=Os.36973.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome10, OSJNBa0082M15.26 (P0427D10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G09, full insert sequence.
FL= gb:AK061964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4540011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45420OsAffx.14941.1.S1_s_at11/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.1.S1_at10/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.5.S1_at1/117+27095759..27096876hypothetical protein
LOC_Os07g45430OsAffx.14941.4.S1_s_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45430OsAffx.14941.3.S1_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45440NANA7+27102506..27103796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36973.1.S1_at--579--5471Chr07:27081264..27081288 (25 bp)
GAACTAACCTATATTGGGTCCCTGG
LOC_Os07g45400
Os.36973.1.S1_at--912--7691Chr07:27081279..27081303 (25 bp)
GGGTCCCTGGATGATGATAGCTGAT
LOC_Os07g45400
Os.36973.1.S1_at--658--6431Chr07:27081301..27081325 (25 bp)
GATCATGCTTGTACGCTATCACTGC
LOC_Os07g45400
Os.36973.1.S1_at--562--4871Chr07:27081315..27081339 (25 bp)
GCTATCACTGCTGACGTTGCACAAA
LOC_Os07g45400
Os.36973.1.S1_at--361--10771Chr07:27081389..27081413 (25 bp)
TTGAGTGGTATACATGCCGCCACCA
LOC_Os07g45400
Os.36973.1.S1_at--374--4411Chr07:27081407..27081431 (25 bp)
GCCACCATGATAAACTCCACTATTG
LOC_Os07g45400
Os.36973.1.S1_at--38--10231Chr07:27081502..27081526 (25 bp)
TATTGTTGTTACTAGGGCCTGCGGG
LOC_Os07g45400
Os.36973.1.S1_at--1145--3811Chr07:27081520..27081544 (25 bp)
CTGCGGGAGCGACCTTGTACATAAT
LOC_Os07g45400
Os.36973.1.S1_at--492--1611Chr07:27081570..27081594 (25 bp)
AGCTGTCCCTGAAAGAAGTTGCCCC
LOC_Os07g45400
Os.36973.1.S1_at--340--2631Chr07:27081698..27081722 (25 bp)
AACCTAGTGTGAGTTAGCCCCTGCT
LOC_Os07g45400
Os.36973.1.S1_at--349--6891Chr07:27081755..27081779 (25 bp)
GTATATCATATGGTGGCTGGCCTCA
LOC_Os07g45400
Target Sequence 
GAACTAACCTATATTGGGTCCCTGGATGATGATAGCTGATCATGCTTGTACGCTATCACTGCTGACGTTGCACAAATTCA
AGATGGGGATTGAGGAAAATTTTTCGGTTTTGGACCAGGTTGGGCTTGAGTGGTATACATGCCGCCACCATGATAAACTC
CACTATTGAAGTGAGTTTTGTGTTGAAATTGTGGCCTTGTGGGGGCGGCCTTGATGTAGAATATCTTACACCCTGGGGTA
TTGTTGTTACTAGGGCCTGCGGGAGCGACCTTGTACATAATGTAACATTAATCCATTTGTCAAGCAAGCTGTCCCTGAAA
GAAGTTGCCCCAGGGCCCTGTTTGTAGCTTATATTCAAAGTTAGGAAGATATGCATGCATGCAGTAGCTGATGAGTCGAA
AGGAATGTATTGGTTTTTGTTTTGCTCGATATGTAACCTAGTGTGAGTTAGCCCCTGCTCAAAACCGAGGGTTGATATTA
TACAACATTATGTATATCATATGGTGGCTGGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis