Browse Element(s) Details


Os.55007.1.S1_x_at

Description gb:AK107302.1
DB_XREF= gi:32992511
TID=Os.55007.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C10, full insert sequence.
FL= gb:AK107302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g453307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55007.1.S1_x_at--17--5051Chr07:27042913..27042937 (25 bp)
GCAGAGTGTCAGCAGCGCAGCATCA
LOC_Os07g45330
Os.55007.1.S1_x_at--33--1552Chr08:20340777..20341211 (25 bp)
AGCATCAGCCATCGAACGGTTCAAA
NONE
Os.55007.1.S1_x_at--356--6811Chr07:27042857..27042881 (25 bp)
GTTTTCAGAATATCACTCACCATGG
LOC_Os07g45330
Os.55007.1.S1_x_at--8--2751Chr07:27042784..27042807 (24 bp)
AAGAAGATGTGCGAGGAACCCCAAT
LOC_Os07g45330
Os.55007.1.S1_x_at--84--2431Chr07:27042725..27042749 (25 bp)
AAAAGCTTGGCCTTACTGGAAGCGA
LOC_Os07g45330
Os.55007.1.S1_x_at--503--7811Chr07:27042697..27042721 (25 bp)
GGTCTTCGCAGCAAGTATTTTCGCA
LOC_Os07g45330
Os.55007.1.S1_x_at--258--6031Chr07:27042654..27042678 (25 bp)
GAGATGTTTTTAGCACTCCCAGAAA
LOC_Os07g45330
Os.55007.1.S1_x_at--457--3011NONE
AATGCTCAACGGTGGGCAATCTCTC
NONE
Os.55007.1.S1_x_at--532--5191Chr07:27042049..27042073 (25 bp)
GCAATCTCTCCGGTATTAGCTGAAG
NONE
Os.55007.1.S1_x_at--983--4731Chr07:27042031..27042055 (25 bp)
GCTGAAGCTAGGGATTGAAACGGAT
NONE
Os.55007.1.S1_x_at--285--57524Chr12:3721614..3721638 (25 bp)
GACGGAACGAATACGGTAGCGAATA
NONE
Target Sequence 
GCAGAGTGTCAGCAGCGCAGCATCAGCCATCGAACGGTTCAAAGACGCACATGATCGTTTTCAGAATATCACTCACCATG
GAAGCATGGTAGCAGCAGTGATGGAATGTGGTACCGATCATACACAAGAGAAGAAGATGTGCGAGGAACCCCAATAAAAG
GCCAAAGTGACAGCTATAGCTGAAATTCAAAAGCTTGGCCTTACTGGAAGCGAGGTGGTCTTCGCAGCAAGTATTTTCGC
AAAGGAACCAAACCAAATGGAGATGTTTTTAGCACTCCCAGAAATCTATAAGAGGGACTACATAGTCCAAATGCTCAACG
GTGGGCAATCTCTCCGGTATTAGCTGAAGCTAGGGATTGAAACGGATCGGAAACGGACGGAAACTAGCTTTAACATATTC
GTTTTCATATTTTTTTCGGAATCGGAATCGAAAACTCGGATACGGAAATGAAATCGAATATTATCGAATACAGATACGGA
GCGAATACGAGACGGAACGAATACGGTAGCGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55007.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis