Browse Element(s) Details


OsAffx.10304.2.S1_at

Description tigr:9635.m04550
TID=OsAffx.10304.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4530010/11Tim44-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10304.2.S1_at--772--5951Chr07:27029867..27029978 (25 bp)
GAGAATGCATTCGACTATAAAAAAT
LOC_Os07g45300
OsAffx.10304.2.S1_at--364--5471Chr07:27029842..27029866 (25 bp)
GAACTGAAGAAAAGACAATCCATGT
LOC_Os07g45300
OsAffx.10304.2.S1_at--866--2751Chr07:27029831..27029855 (25 bp)
AAGACAATCCATGTGGAGTTCTGTT
LOC_Os07g45300
OsAffx.10304.2.S1_at--1068--7511Chr07:27029819..27029843 (25 bp)
GTGGAGTTCTGTTCACTGGGAATTG
LOC_Os07g45300
OsAffx.10304.2.S1_at--637--9691Chr07:27029807..27029831 (25 bp)
TCACTGGGAATTGGTGGAGCCTGCT
LOC_Os07g45300
OsAffx.10304.2.S1_at--665--1671Chr07:27029790..27029814 (25 bp)
AGCCTGCTGTGTGCATAAGAACTTT
LOC_Os07g45300
OsAffx.10304.2.S1_at--972--4951Chr07:27029778..27029802 (25 bp)
GCATAAGAACTTTGAGGGCTCGCAT
LOC_Os07g45300
OsAffx.10304.2.S1_at--395--9791NONE
TAAGAACTTTGAGGGCTCGCATGAT
NONE
OsAffx.10304.2.S1_at--1094--2031Chr07:27029591..27029794 (25 bp)
ACTTTGAGGGCTCGCATGATTGGAC
LOC_Os07g45300
OsAffx.10304.2.S1_at--322--6131Chr07:27029586..27029789 (25 bp)
GAGGGCTCGCATGATTGGACTCGAT
LOC_Os07g45300
OsAffx.10304.2.S1_at--180--7591Chr07:27029584..27029787 (25 bp)
GGGCTCGCATGATTGGACTCGATAA
LOC_Os07g45300
Target Sequence 
GAGAATGCATTCGACTATAAAAAATGAACTGAAGAAAAGACAATCCATGTGGAGTTCTGTTCACTGGGAATTGGTGGAGC
CTGCTGTGTGCATAAGAACTTTGAGGGCTCGCATGATTGGACTCGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10304.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis