Browse Element(s) Details


Os.34356.1.S1_at

Description gb:AK071716.1
DB_XREF= gi:32981739
TID=Os.34356.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycosyl transferase (P0503D09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110G08, full insert sequence.
FL= gb:AK071716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4526011/11galactinol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34356.1.S1_at--848--9951Chr07:27006192..27006216 (25 bp)
TACCCGCGCTCGAGGAGTGAGCTAG
LOC_Os07g45260
Os.34356.1.S1_at--992--3891Chr07:27006246..27006270 (25 bp)
CGGCGGCGTGATTGCATTGCATGCA
LOC_Os07g45260
Os.34356.1.S1_at--1142--51Chr07:27006261..27006285 (25 bp)
ATTGCATGCATTCGAGGGCAGACAT
LOC_Os07g45260
Os.34356.1.S1_at--465--1311Chr07:27006313..27006337 (25 bp)
AGAGGAGGTGTGTACACGTACGTAC
LOC_Os07g45260
Os.34356.1.S1_at--948--9931Chr07:27006331..27006355 (25 bp)
TACGTACGCACGTGCGTGCGTGCAT
LOC_Os07g45260
Os.34356.1.S1_at--1014--631Chr07:27006362..27006386 (25 bp)
ATGCATGTGTCCATACGTGCAAAAC
LOC_Os07g45260
Os.34356.1.S1_at--203--6631Chr07:27006411..27006435 (25 bp)
GTTGTGACGTCATGCAAAACGGCAC
LOC_Os07g45260
Os.34356.1.S1_at--232--3211Chr07:27006488..27006512 (25 bp)
CAATGGAAGGAAGGCGCTCCGTCTC
LOC_Os07g45260
Os.34356.1.S1_at--1074--8391Chr07:27006500..27006524 (25 bp)
GGCGCTCCGTCTCGTAGAAAAACTA
LOC_Os07g45260
Os.34356.1.S1_at--710--6331Chr07:27006606..27006630 (25 bp)
GATGCATGTGCCGATCTCTTTTTCT
LOC_Os07g45260
Os.34356.1.S1_at--897--5211Chr07:27006674..27006698 (25 bp)
GAATTTGATTCATCATGGTGACGAT
LOC_Os07g45260
Target Sequence 
TACCCGCGCTCGAGGAGTGAGCTAGCTAGCTAGCTCGCCGCCGGCGAGCCGAGGCGGCGGCGTGATTGCATTGCATGCAT
TCGAGGGCAGACATACGAGAGAAGAGGAGAGAGGGAGAGGGAGAGGAGGTGTGTACACGTACGTACGCACGTGCGTGCGT
GCATGCATGCATGCATGTGTCCATACGTGCAAAACACAAAAGGGGCAAAAAAAAAAAAAAGTTGTGACGTCATGCAAAAC
GGCACAAATAAGATTAATTAGGACTGGAAGTGGTGAAGAAATACATGCCAAGAGGATCAATGGAAGGAAGGCGCTCCGTC
TCGTAGAAAAACTAATCCTAATTACGAATCTAAATACATATGTATCTAGGTTTATAACTAGGATTGACTTTTTTTTACAG
AGTAGTACATATGTGGATGCATGTGCCGATCTCTTTTTCTTTCTTCCTCTTGTTTTGGGTTCCTTGAAAAATTTTCTACC
GTTGAATTTGATTCATCATGGTGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis