Browse Element(s) Details


Os.46988.1.A1_at

Description gb:NM_185909.1
DB_XREF= gi:34898903
GEN=P0503D09.22
TID=Os.46988.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein, similar to transposase (P0503D09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein, similar to transposase (P0503D09.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4525011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46988.1.A1_at--461--4351Chr07:27002022..27002046 (25 bp)
CCAGCGCATGGCAGAATACTTCAAG
LOC_Os07g45250
Os.46988.1.A1_at--14--8231Chr07:27002077..27002101 (25 bp)
GGCAATCCTTCAATGAACTTTCCTG
LOC_Os07g45250
Os.46988.1.A1_at--295--8711Chr07:27002106..27002130 (25 bp)
TGTCCAGGATGCCATGAATGCCAAA
LOC_Os07g45250
Os.46988.1.A1_at--1025--2491Chr07:27002253..27002277 (25 bp)
AACATCGGAGTATACCCGCATCAGT
LOC_Os07g45250
Os.46988.1.A1_at--697--6931Chr07:27002276..27002300 (25 bp)
GTAGGGATCATGCACGCGAGCTCAC
LOC_Os07g45250
Os.46988.1.A1_at--644--5551Chr07:27002301..27002325 (25 bp)
GAAACGCGCTGAATGTTCCTGCAAC
LOC_Os07g45250
Os.46988.1.A1_at--1059--8031Chr07:27002383..27002407 (25 bp)
GGAGTTACCACTGCTGATTACATGT
LOC_Os07g45250
Os.46988.1.A1_at--829--4251Chr07:27002421..27002445 (25 bp)
CCTGCCCTATCTGGATAACACTTGG
LOC_Os07g45250
Os.46988.1.A1_at--789--8871Chr07:27002457..27002481 (25 bp)
TGATGTACCCAAATTCTCACCAGAC
LOC_Os07g45250
Os.46988.1.A1_at--617--3911Chr07:27002533..27002557 (25 bp)
CTGGAGTGTGGTCTTTCTGTTTTTA
LOC_Os07g45250
Os.46988.1.A1_at--326--1291Chr07:27002565..27002589 (25 bp)
AGATCGCGTGCAGTCTGTCATGGAT
LOC_Os07g45250
Target Sequence 
CCAGCGCATGGCAGAATACTTCAAGGAAAGAAGTGCTGCAGCGAAGAAAGCAATTGGCAATCCTTCAATGAACTTTCCTG
AATGTGTCCAGGATGCCATGAATGCCAAAATGCAAAAGGCGCAGATTCATAGTGTGACCTGCATGGAAATCAAGGAGAAC
AAATATTTTCCCGGGGAAGAGGTTCAAAAGTTTAAGGTTCAGTCAAATCAGAAGAAGGTTGTTGTTCAATTAACATCGGA
GTATACCCGCATCAGTAGGGATCATGCACGCGAGCTCACGAAACGCGCTGAATGTTCCTGCAACAAGTCAAAGCTGCTTC
ATAAGCCCTGTTCTCATGTCATTGCCGTCTGTTGTCAGATTGGAGTTACCACTGCTGATTACATGTCCCCGTACTACACC
CTGCCCTATCTGGATAACACTTGGAGTGGAAATTGTGATGTACCCAAATTCTCACCAGACTACAAAATCATCATGCCATT
TGACAAACCAACTTGGATCCCTGACAAAAAGCTGGAGTGTGGTCTTTCTGTTTTTAGAACATCAGATCGCGTGCAGTCTG
TCATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46988.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis