Browse Element(s) Details


Os.20299.1.S1_at

Description gb:AK066044.1
DB_XREF= gi:32976062
TID=Os.20299.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (P0503D09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048P13, full insert sequence.
FL= gb:AK066044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4519411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20299.1.S1_at--210--2991Chr07:26977065..26977089 (25 bp)
AATGTGACTTGGTCGACTTTGCCTG
LOC_Os07g45194
Os.20299.1.S1_at--381--10291Chr07:26977048..26977072 (25 bp)
TTTGCCTGCCGGACTAAAGTGATTA
LOC_Os07g45194
Os.20299.1.S1_at--506--9551Chr07:26977022..26977046 (25 bp)
TCTTCTGTTTTATCGAGTCGGCCAA
LOC_Os07g45194
Os.20299.1.S1_at--584--6091Chr07:26976997..26977021 (25 bp)
GAGTGACTAAAAACCTGTGGCTTAC
LOC_Os07g45194
Os.20299.1.S1_at--484--8651Chr07:26976982..26977006 (25 bp)
TGTGGCTTACTAAACCTAGGTACGG
LOC_Os07g45194
Os.20299.1.S1_at--750--8652Chr07:26858738..26858757 (20 bp)
TGTCATTGTAATTAAGCCCTTTGTC
NONE
Os.20299.1.S1_at--194--1191Chr07:26976875..26976899 (25 bp)
AGTAGCAGGGCCGTGCTAACGCTAC
LOC_Os07g45194
Os.20299.1.S1_at--28--2616Chr03:3228627..3228649 (23 bp)
AACGCTACGGCGATATTTAGTAAGC
NONE
Os.20299.1.S1_at--1098--2551Chr07:26976779..26976803 (25 bp)
AACTGTCACAAACTTGGGTAGCTTT
LOC_Os07g45194
Os.20299.1.S1_at--1038--8671Chr07:26976750..26976774 (25 bp)
TGTGTAGTTCAATTCTCGATCAAGA
LOC_Os07g45194
Os.20299.1.S1_at--741--7651Chr07:26976725..26976749 (25 bp)
GGGAGTAATTTCTGTACCTTGTTGA
LOC_Os07g45194
Target Sequence 
AATGTGACTTGGTCGACTTTGCCTGCCGGACTAAAGTGATTACTCTTCTGTTTTATCGAGTCGGCCAAGAGTGACTAAAA
ACCTGTGGCTTACTAAACCTAGGTACGGCAAACTTGGATAGTAAAGTATTGTAATAAATCTGTCATTGTAATTAAGCCCT
TTGTCCCTAAAAAAAGTACTTTTAGTTNCTAGTAGCAGGGCCGTGCTAACGCTACGGCGATATTTAGTAAGCATGCATAA
AAATATTTATATATGTCAACATCCATGTTCATTTTATTATTATTATAACTGTCACAAACTTGGGTAGCTTTTAGTTGTGT
AGTTCAATTCTCGATCAAGAGGGAGTAATTTCTGTACCTTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis