Browse Element(s) Details


OsAffx.28913.1.S1_at

Description tigr:9635.m04542
TID=OsAffx.28913.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4522011/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28913.1.S1_at--828--1391Chr07:26992365..26992389 (25 bp)
AGACGTATCACGTGACCCGCATGAA
LOC_Os07g45220
OsAffx.28913.1.S1_at--456--2171Chr07:26992389..26992413 (25 bp)
ACACTGCGGATACAAATGTTTTCTC
LOC_Os07g45220
OsAffx.28913.1.S1_at--107--751Chr07:26992404..26992428 (25 bp)
ATGTTTTCTCCAACGAAGCGCATCA
LOC_Os07g45220
OsAffx.28913.1.S1_at--717--1051Chr07:26992455..26992479 (25 bp)
AGGGTGTGATTGTTCATCTGATATC
LOC_Os07g45220
OsAffx.28913.1.S1_at--908--1471Chr07:26992535..26992559 (25 bp)
AGAATCGCTCGATGTTCATGCAACA
LOC_Os07g45220
OsAffx.28913.1.S1_at--899--8031Chr07:26992616..26992640 (25 bp)
GGAGTCAGCATTGCCTCATACATGT
LOC_Os07g45220
OsAffx.28913.1.S1_at--1154--9851Chr07:26992649..26992673 (25 bp)
TACAGCCTGTCCTATCTAGTCAAAA
LOC_Os07g45220
OsAffx.28913.1.S1_at--814--631Chr07:26992692..26992716 (25 bp)
ATGCATCCAACCTTGTTGACCGGAA
LOC_Os07g45220
OsAffx.28913.1.S1_at--824--4232Chr07:26992711..26992735 (25 bp)
CCGGAATTTTGCTCGGAATGTCCTA
LOC_Os07g45220
OsAffx.28913.1.S1_at--784--9751Chr07:26992783..26992807 (25 bp)
TAAACGTTTGGAGCGTGGCCTTCCT
LOC_Os07g45220
OsAffx.28913.1.S1_at--751--4431Chr07:26992800..26992824 (25 bp)
GCCTTCCTGCCTTTTTAACATCAGA
LOC_Os07g45220
Target Sequence 
AGACGTATCACGTGACCCGCATGAACACTGCGGATACAAATGTTTTCTCCAACGAAGCGCATCAAAGGTTTAAGGTTCAG
TCAAGACAGAAGGGTGTGATTGTTCATCTGATATCGAAACGTATCCATAAGAATCACAAAAGGAACATAGCGTGTCAAAG
CGAAATCAGAAGAATCGCTCGATGTTCATGCAACAAAGCAAGGCTGCTTCACAAGCCCTGCTCTCATGTCATTGCCGTCT
GCTGTCAGGTTGGAGTCAGCATTGCCTCATACATGTCCCCCTTCTACAGCCTGTCCTATCTAGTCAAAACTTGGAGTGGA
AAATCAGATGCATCCAACCTTGTTGACCGGAATTTTGCTCGGAATGTCCTAAACTACAAATTTCTGTGCCCAGGGGAGAC
GCAAACATGGATCCCTGATAAACGTTTGGAGCGTGGCCTTCCTGCCTTTTTAACATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis