Browse Element(s) Details


Os.35897.2.S1_x_at

Description gb:NM_185913.1
DB_XREF= gi:34898911
GEN=P0503D09.26
TID=Os.35897.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein, similar to Arabidopsis thaliana chromosome 5, At5g18940 (P0503D09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein, similar to Arabidopsis thaliana chromosome 5, At5g18940 (P0503D09.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4528011/11Mo25 protein, putative, expressed
LOC_Os03g245201/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35897.2.S1_x_at--403--6431Chr07:27014131..27014155 (25 bp)
GATCTTCTAGATTTCCTTGTAGTTT
LOC_Os07g45280
Os.35897.2.S1_x_at--785--1171Chr07:27014964..27014988 (25 bp)
AGTAGCTTCGAGTTGTTTTTCCAGT
LOC_Os07g45280
Os.35897.2.S1_x_at--617--10732Chr07:27015013..27015037 (25 bp)
TTGCTTCTGATGCTCTGAACACCTT
LOC_Os07g45280
Os.35897.2.S1_x_at--560--4831Chr07:27015129..27015153 (25 bp)
GCTCACCAAACATGAAGCCGCAGTT
LOC_Os07g45280
Os.35897.2.S1_x_at--1133--5411Chr07:27015142..27015166 (25 bp)
GAAGCCGCAGTTTCTGAGTTTCTGT
LOC_Os07g45280
Os.35897.2.S1_x_at--548--6071Chr07:27015157..27015181 (25 bp)
GAGTTTCTGTGCTCCCATTATGAAC
LOC_Os07g45280
Os.35897.2.S1_x_at--753--8971Chr07:27015356..27015376 (21 bp)
TGAACAGTTCTTTGAGCTCTACACA
LOC_Os07g45280
Os.35897.2.S1_x_at--68--10491Chr07:27015512..27015536 (25 bp)
TTCAGAGTTTTTGTTAGAGGCCCCA
LOC_Os07g45280
Os.35897.2.S1_x_at--415--10851Chr07:27015592..27015612 (21 bp)
TTGGCCTGCTGAAGGTATTTGTTGC
LOC_Os07g45280
Os.35897.2.S1_x_at--812--10671Chr07:27016665..27016689 (25 bp)
TTGCCAATCCAAACAAGCCTCGTGA
LOC_Os07g45280
Os.35897.2.S1_x_at--213--931Chr07:27016738..27016762 (25 bp)
AGGCAATCTTCCCACAAGCAAAGGT
LOC_Os07g45280
Target Sequence 
GATCTTCTAGATTTCCTTGTAGTTTGCTACAAGAACTTGGAAGTTGCATTGAACTGTGGGAATATGTTGCGAGAATGCAT
AAAATATCCTACACTTGCAAAATATATATTGGAGTCAAGTAGCTTCGAGTTGTTTTTCCAGTATGTTGAATTATCGAACT
TTGATATTGCTTCTGATGCTCTGAACACCTTCAAGGATTTGCTCACCAAACATGAAGCCGCAGTTTCTGAGTTTCTGTGC
TCCCATTATGAACAGTTCTTTGAGCTCTACACAAGACTTCTAACTTCAACTAATTATGTTACAAGAAGACAATCAGTGAA
GTTTCTTTCAGAGTTTTTGTTAGAGGCCCCAAATGCTCAAATAATGAAGCGGTACATTGTGGAAGTCAGTTATTTAAATA
TCATGATTGGCCTGCTGAAGGTATTTGTTGCCAATCCAAACAAGCCTCGTGATATTATTCAAGTTTTGGTAGACAATCAC
AGAGAACTGTTGAAGCTACTAGGCAATCTTCCCACAAGCAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35897.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis