Browse Element(s) Details


OsAffx.10304.1.S1_s_at

Description gb:NM_185917.1
DB_XREF= gi:34898919
GEN=P0503D09.30
TID=OsAffx.10304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein, similar to Arabidopsis thaliana chromosome 5, At5g27390 (P0503D09.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4530011/11Tim44-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10304.1.S1_s_at--1006--2891Chr07:27032654..27032678 (25 bp)
AAGGTTGTCATGATGAGCCCTGGTT
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--880--5871Chr07:27032640..27032664 (25 bp)
GAGCCCTGGTTTTGTATATGAGCCA
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--617--5851Chr07:27032621..27032645 (25 bp)
GAGCCATACAGCATTCGGGAACCAA
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--763--3171Chr07:27032515..27032623 (25 bp)
CAATCCCCTTCTGGAAAAGTTCTCT
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--690--8931Chr07:27032475..27032499 (25 bp)
TGACCCATCTGCTAGTTTCCAGGAC
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--65--8031Chr07:27030014..27030036 (23 bp)
GGAGGTTAACACACTGATGGCACAT
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--174--8511Chr07:27029997..27030021 (25 bp)
TGGCACATGGAGACACATCATCTCT
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--523--1551Chr07:27029544..27029568 (25 bp)
AGCTTTCATACAGCTTACGCTTGAA
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--768--9911Chr07:27029529..27029553 (25 bp)
TACGCTTGAATTCGTCACTAAACAG
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--743--5891Chr07:27028613..27028636 (24 bp)
GAGCTGATTATTGTCTGGACTCTAG
LOC_Os07g45300
OsAffx.10304.1.S1_s_at--311--5931Chr07:27028583..27028607 (25 bp)
GAGCATCAGGGATTCTTATTGTTCT
LOC_Os07g45300
Target Sequence 
AAGGTTGTCATGATGAGCCCTGGTTTTGTATATGAGCCATACAGCATTCGGGAACCAATCCCCTTCTGGAAAAGTTCTCT
TCCCTTTCCAAACACTGACCCATCTGCTAGTTTCCAGGACAGAATTGTTAGAGTGAGTAGCTTTAAGCTCAACACTAAAA
GATGGTTTACACCAAGTGGCTGGAGAAGAACAAAGGAGGACGTTATTCTGGAGATGAAGAATGCATATGCTGTGTCAAGA
TTGAGAAAGAAAACAGGCTATACCAAAAAGGAATTCTATGATCAAGCATTCAAGATATACAAGGAGGTTAACACACTGAT
GGCACATGGAGACACATCATCTCTCCGTAAAATATTGACAGAGAGAATGCATTCGATTGGACTCGATAAAAATGACCTTG
ACAAAGCTTTCATACAGCTTACGCTTGAATTCGTCACTAAACAGAAATTTGAAGCCTATAATACAAAAGGTGAGGTCGTG
TCTGGAGATAAGTCAAAAGAGCTGATTATTGTCTGGACTCTAGTGATTGAGCATCAGGGATTCTTATTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10304.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis