Browse Element(s) Details


OsAffx.28915.1.S1_at

Description tigr:9635.m04554
TID=OsAffx.28915.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4534011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28915.1.S1_at--263--5891Chr07:27047829..27047849 (21 bp)
GAGCGTGAAACACACCTGGATCAGA
LOC_Os07g45340
OsAffx.28915.1.S1_at--999--3171Chr07:27047938..27047962 (25 bp)
AATTGGGAGCTATTGACCTCTCCAC
LOC_Os07g45340
OsAffx.28915.1.S1_at--978--8011Chr07:27047984..27048008 (25 bp)
GGAGGACTTCCAGCCACAGCTAGTA
LOC_Os07g45340
OsAffx.28915.1.S1_at--642--10771Chr07:27048025..27048049 (25 bp)
TTGAGGCACCTCAACACTGGAGTGA
LOC_Os07g45340
OsAffx.28915.1.S1_at--876--6111Chr07:27048044..27048068 (25 bp)
GAGTGAGATGCGTTGTCCTCAGCTT
LOC_Os07g45340
OsAffx.28915.1.S1_at--735--5171Chr07:27048099..27048123 (25 bp)
GCAAGGTTCTTCCACACTTGGACTA
LOC_Os07g45340
OsAffx.28915.1.S1_at--291--2071Chr07:27048114..27048138 (25 bp)
ACTTGGACTACTCCCATGGAACCGA
LOC_Os07g45340
OsAffx.28915.1.S1_at--713--971Chr07:27048214..27048238 (25 bp)
AGGAGCACTCTTTTACTGTCTTGAC
LOC_Os07g45340
OsAffx.28915.1.S1_at--505--3871Chr07:27048229..27048253 (25 bp)
CTGTCTTGACCGGTACGGATGTAGT
LOC_Os07g45340
OsAffx.28915.1.S1_at--707--6271Chr07:27048246..27048270 (25 bp)
GATGTAGTGCCGTGCGTCCATGATG
LOC_Os07g45340
OsAffx.28915.1.S1_at--873--791Chr07:27048274..27048298 (25 bp)
ATGGGACTGGCAATGGCAATTACGC
LOC_Os07g45340
Target Sequence 
GAGCGTGAAACACACCTGGATCAGAGTTGGGGATTGGACACTACCCTTCACAGGCAAGGTTGAGCATGTGCCAGAGCTGA
AGTTGTGGTTTGGCATTTGCACCAATGACTGGAAATTGGGAGCTATTGACCTCTCCACTATTATCTCCACAGCCACCATG
GAGGACTTCCAGCCACAGCTAGTAGGCACTTGGAAGGAGCTTGAGGCACCTCAACACTGGAGTGAGATGCGTTGTCCTCA
GCTTGCCAACCTGGGCTCAGGCAGGTTCTGCATCGCAAGGTTCTTCCACACTTGGACTACTCCCATGGAACCGAACTCAT
TTGGTTATGATTCAATTAAGGTGCACTCTTTTTCTGATTTTGATTCTGATTCTGATTCAATTGAGTTTGAGGAGCACTCT
TTTACTGTCTTGACCGGTACGGATGTAGTGCCGTGCGTCCATGATGGCAATGGGACTGGCAATGGCAATTACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis