Browse Element(s) Details


Os.20299.1.S1_a_at

Description gb:AK066044.1
DB_XREF= gi:32976062
TID=Os.20299.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (P0503D09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048P13, full insert sequence.
FL= gb:AK066044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4523411/11expressed protein
LOC_Os07g4519411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20299.1.S1_a_at--838--6133Chr07:26858458..26858482 (25 bp)
GAGGGATTCTTTCATAGATTTGAAG
NONE
Os.20299.1.S1_a_at--901--573Chr07:26858503..26858527 (25 bp)
ATCCAGTTTCGACCAGCATTATGTT
NONE
Os.20299.1.S1_a_at--259--3433Chr07:26858506..26858530 (25 bp)
CAGTTTCGACCAGCATTATGTTTCC
NONE
Os.20299.1.S1_a_at--95--6853Chr07:26858508..26858532 (25 bp)
GTTTCGACCAGCATTATGTTTCCTT
NONE
Os.20299.1.S1_a_at--435--10633Chr07:26858510..26858534 (25 bp)
TTCGACCAGCATTATGTTTCCTTCA
NONE
Os.20299.1.S1_a_at--842--4073Chr07:26858512..26858536 (25 bp)
CGACCAGCATTATGTTTCCTTCAAG
NONE
Os.20299.1.S1_a_at--985--1713Chr07:26858514..26858538 (25 bp)
ACCAGCATTATGTTTCCTTCAAGGA
NONE
Os.20299.1.S1_a_at--451--8053Chr07:26858536..26858560 (25 bp)
GGAGAAAATCCATGGCTATGATACT
NONE
Os.20299.1.S1_a_at--685--5513Chr07:26858539..26858563 (25 bp)
GAAAATCCATGGCTATGATACTCAA
NONE
Os.20299.1.S1_a_at--399--3033Chr07:26858542..26858566 (25 bp)
AATCCATGGCTATGATACTCAAGAA
NONE
Os.20299.1.S1_a_at--796--4333Chr07:26858545..26858569 (25 bp)
CCATGGCTATGATACTCAAGAAATA
NONE
Target Sequence 
GAGGGATTCTTTCATAGATTTGAAGTTCAANGTGGGNGCGTTTCCATCCAGTTTCGACCAGCATTATGTTTCCTTCAAGG
AGAAAATCCATGGCTATGATACTCAAGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20299.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis