Browse Element(s) Details


Os.53881.1.S1_s_at

Description gb:AK100581.1
DB_XREF= gi:32985790
TID=Os.53881.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105O07, full insert sequence.
FL= gb:AK100581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g431601/11expressed protein
LOC_Os11g034501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53881.1.S1_s_at--704--6112Chr11:1323869..1323888 (20 bp)
GAGTGCGGCGACGAGTTCGCGCTTT
LOC_Os11g03450
Os.53881.1.S1_s_at--537--1871Chr01:25068915..25068939 (25 bp)
ACGAGTTCGCGCTTTTCTTCCTCGA
NONE
Os.53881.1.S1_s_at--248--10651Chr01:25068910..25068934 (25 bp)
TTCGCGCTTTTCTTCCTCGACAAGG
NONE
Os.53881.1.S1_s_at--166--4591Chr01:25068907..25068931 (25 bp)
GCGCTTTTCTTCCTCGACAAGGCCG
NONE
Os.53881.1.S1_s_at--509--472Chr06:4755964..4755988 (25 bp)
ATCTCCACGGTGACGGCCTCGCGGA
NONE
Os.53881.1.S1_s_at--44--10712Chr06:4755838..4755862 (25 bp)
TTGCTGCGCTCAGCATAGGCCGGAG
NONE
Os.53881.1.S1_s_at--1032--4253Chr10:456227..456282 (25 bp)
CCGGAGGCGACGATGAGCAGCGGCT
NONE
Os.53881.1.S1_s_at--652--8352Chr04:25330728..25331087 (25 bp)
GGCGGCGACGGCGAATGCTGGCGGA
LOC_Os04g43160
Os.53881.1.S1_s_at--547--1111Chr01:25068586..25068610 (25 bp)
AGTGTCAGTGAGAGCTTCGATGGCA
NONE
Os.53881.1.S1_s_at--1082--7111Chr01:25068583..25068607 (25 bp)
GTCAGTGAGAGCTTCGATGGCATGA
NONE
Os.53881.1.S1_s_at--803--6232Chr06:4755562..4755585 (24 bp)
GATGGCATGAACAAGGCCAGTGCCA
NONE
Target Sequence 
GAGTGCGGCGACGAGTTCGCGCTTTTCTTCCTCGACAAGGCCGCCTGCACCACCGTCTCCGGCGCCATCTCCACGGTGAC
GGCCTCGCGGACAGGCTCGCCGGGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGGAGGTGACATCGCCGGCCGGCT
TGCTGCGCTCAGCATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCGACGGCGAATGCTGG
CGGAGGCGGAGCGGCGGCTGCGGCGACGCGGCTGTTGGCGACGGCGACGACGACGACGACGGGAGCGGCGGCGCGACGAC
GGCGACGACGACCATGGAGAGTGTCAGTGAGAGCTTCGATGGCATGAACAAGGCCAGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53881.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis