Browse Element(s) Details


OsAffx.14252.1.S1_at

Description tigr:9632.m04128
TID=OsAffx.14252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4312010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14252.1.S1_at--508--8731Chr04:25306232..25306256 (25 bp)
TGTACGATCCGGCTAGGTTCCGGTC
LOC_Os04g43120
OsAffx.14252.1.S1_at--1085--10071Chr04:25306219..25306243 (25 bp)
TAGGTTCCGGTCCATGATCACGAAG
LOC_Os04g43120
OsAffx.14252.1.S1_at--547--6691Chr04:25306216..25306240 (25 bp)
GTTCCGGTCCATGATCACGAAGGAG
LOC_Os04g43120
OsAffx.14252.1.S1_at--240--7251Chr04:25306210..25306234 (25 bp)
GTCCATGATCACGAAGGAGGGATTC
LOC_Os04g43120
OsAffx.14252.1.S1_at--947--4231Chr04:25306175..25306199 (25 bp)
CCGTCTTCCGCTTCGAGACAAAGGA
LOC_Os04g43120
OsAffx.14252.1.S1_at--434--3631Chr04:25306171..25306195 (25 bp)
CTTCCGCTTCGAGACAAAGGACGGC
LOC_Os04g43120
OsAffx.14252.1.S1_at--878--4891Chr04:25306166..25306190 (25 bp)
GCTTCGAGACAAAGGACGGCGCCGT
LOC_Os04g43120
OsAffx.14252.1.S1_at--572--9131Chr04:25306127..25306151 (25 bp)
TCCACTACGACGAGCGCGGATTCCG
LOC_Os04g43120
OsAffx.14252.1.S1_at--679--10511NONE
TTCAGGGCCCCGTTGATCGTAATTT
NONE
OsAffx.14252.1.S1_at--982--7531Chr04:25305827..25306102 (25 bp)
GGGCCCCGTTGATCGTAATTTGCAA
LOC_Os04g43120
OsAffx.14252.1.S1_at--759--4191Chr04:25305824..25305844 (21 bp)
CCCCGTTGATCGTAATTTGCAAGCG
LOC_Os04g43120
Target Sequence 
TGTACGATCCGGCTAGGTTCCGGTCCATGATCACGAAGGAGGGATTCGTGTACGACCCCGTCTTCCGCTTCGAGACAAAG
GACGGCGCCGTCGGCGGGCTCCTCCTCCACTACGACGAGCGCGGATTCCGCGTCGGGCCGGTCCCGAGTTTTCAGGGCCC
CGTTGATCGTAATTTGCAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis