Browse Element(s) Details


Os.55744.1.S1_at

Description gb:AK108706.1
DB_XREF= gi:32993915
TID=Os.55744.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A06, full insert sequence.
FL= gb:AK108706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4313011/11Transcriptional corepressor LEUNIG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55744.1.S1_at--449--2211Chr04:25311673..25311697 (25 bp)
ACAAGCCCAAGCACAGGGAAATCTT
LOC_Os04g43130
Os.55744.1.S1_at--478--5591Chr04:25311690..25311714 (25 bp)
GAAATCTTGGCAACTCTACCAATTT
LOC_Os04g43130
Os.55744.1.S1_at--1152--4191Chr04:25311729..25311753 (25 bp)
CCCGAAGATTGTCAGCGCTAACCAG
LOC_Os04g43130
Os.55744.1.S1_at--1020--1611Chr04:25311742..25311766 (25 bp)
AGCGCTAACCAGGAGCGTGTTGAAT
LOC_Os04g43130
Os.55744.1.S1_at--554--5851Chr04:25311840..25311864 (25 bp)
GACCAGACCAAGAATATCTCATGAA
LOC_Os04g43130
Os.55744.1.S1_at--522--5151Chr04:25312002..25312021 (20 bp)
GCAACAGCAAACACAACAGGGCAAT
LOC_Os04g43130
Os.55744.1.S1_at--37--1531Chr04:25312971..25312995 (25 bp)
AGCAGCAAATAGTACCGGAACAGCA
LOC_Os04g43130
Os.55744.1.S1_at--826--3931Chr04:25312986..25313010 (25 bp)
CGGAACAGCAAATACAGTTGGTCCT
LOC_Os04g43130
Os.55744.1.S1_at--58--9911Chr04:25313040..25313064 (25 bp)
TACTCATACGCCTGGAGATGGACTT
LOC_Os04g43130
Os.55744.1.S1_at--730--5511Chr04:25313258..25313282 (25 bp)
GAACAATTTGGTGACATGGGCTCTT
LOC_Os04g43130
Os.55744.1.S1_at--389--7371Chr04:25313268..25313292 (25 bp)
GTGACATGGGCTCTTTGGATGATAA
LOC_Os04g43130
Target Sequence 
ACAAGCCCAAGCACAGGGAAATCTTGGCAACTCTACCAATTTAGGGGATATGGATCCCCGAAGATTGTCAGCGCTAACCA
GGAGCGTGTTGAATGGTAAAGATGGACAACCTGCTGGAACTGATGGGTGCATTACTTCCCCAATGCAATCCAGTTCACCC
AAAGTCAGACCAGACCAAGAATATCTCATGAAGACATCTTCTCAGCAAACACAGGAACAACTTCAGCAGCAGCATAATCA
GCAACAGCAACAGCAAACACAACAGGGCAATAGAAAAAGAAAGCAACCTACATCTTCAGGAGCAGCAAATAGTACCGGAA
CAGCAAATACAGTTGGTCCTTCGACCAATTNCACCACCATCTACNTCCGTCTACTCATACGCCTGGAGATGGACTTNGGA
ATGACTGGNCAATATGCGCCATGTTCCGNAAAACTTNATGATGTATGGTGTNGGAAGGANCAGGNCTGCCATCCTCGTNA
AACCTGGATGATCTTGAACAATTTGGTGACATGGGCTCTTTGGATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis