Browse Element(s) Details


Os.1193.1.S1_at

Description gb:AF001505.1
DB_XREF= gi:2160781
GEN=OsAMT1
TID=Os.1193.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1193 (NCBI UniGene Cluster)
DEF=Oryza sativa putative ammonium transporter OsAMT1p (OsAMT1) mRNA, complete cds.
PROD=putative ammonium transporter OsAMT1p
FL= gb:AK105667.1 gb:AK073718.1 gb:AF001505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4307010/11Ammonium transporter 1, member 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43050Os.27988.1.A1_at11/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43050OsAffx.26439.1.S1_x_at10/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43060OsAffx.14250.1.S1_at11/114+25273148..25274023enzyme of the cupin superfamily, putative, expressed
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1193.1.S1_at--48--7051Chr04:25282995..25283019 (25 bp)
GTAACCAATCCAGAACGAACGACGT
LOC_Os04g43070
Os.1193.1.S1_at--433--1411Chr04:25283032..25283056 (25 bp)
AGAAATCACGGGTTTCTCTCCCTCT
LOC_Os04g43070
Os.1193.1.S1_at--176--4051Chr04:25283058..25283082 (25 bp)
CGATCTCGATCGTCACGTCATAAAT
LOC_Os04g43070
Os.1193.1.S1_at--9--10791Chr04:25283083..25283107 (25 bp)
TTGATCCCCATATTTGATTGCCAGT
LOC_Os04g43070
Os.1193.1.S1_at--228--6591Chr04:25283098..25283122 (25 bp)
GATTGCCAGTTTCTGTTTGGGCCAA
LOC_Os04g43070
Os.1193.1.S1_at--298--10251Chr04:25283113..25283137 (25 bp)
TTTGGGCCAAATGCTTTTGCCGCTC
LOC_Os04g43070
Os.1193.1.S1_at--439--1111NONE
AGTGTCTTTCACTTTTGCCTGGGCT
NONE
Os.1193.1.S1_at--807--7571Chr04:25283199..25283223 (25 bp)
GGGCTTCTCTTGTGTACAGGCATGC
LOC_Os04g43070
Os.1193.1.S1_at--28--2131Chr04:25283214..25283238 (25 bp)
ACAGGCATGCGTACGTGTCTTAGAA
LOC_Os04g43070
Os.1193.1.S1_at--579--4831Chr04:25283387..25283411 (25 bp)
GCTCAAAGACTTTGCGTGGGTCCTT
LOC_Os04g43070
Os.1193.1.S1_at--735--7491Chr04:25283402..25283426 (25 bp)
GTGGGTCCTTTTGTCCTGCAGTGCT
LOC_Os04g43070
Target Sequence 
GTAACCAATCCAGAACGAACGACGTCACAGCGAAGGAAGAAATCACGGGTTTCTCTCCCTCTCCGATCTCGATCGTCACG
TCATAAATTTGATCCCCATATTTGATTGCCAGTTTCTGTTTGGGCCAAATGCTTTTGCCGCTCTCTCTGGTGTTGCAAGA
CTGTAAAAACACTGTAGGATGGACGAGTGTCTTTCACTTTTGCCTGGGCTTCTCTTGTGTACAGGCATGCGTACGTGTCT
TAGAATGTGTGGTGTGAAGGGTGGGGAAGAATCAGAGGTTAGGGTTTAATTTTCTTTTGCACAATGGTTACTGCTATTAT
TGTTTTATTTTGTGGTCGAATTTTATCGTCATAAGGGTGTGGTGGAATGGTGGTCAAGATAGGTGGCTGTGCAGGGCTCA
AAGACTTTGCGTGGGTCCTTTTGTCCTGCAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis