Browse Element(s) Details


Os.56053.1.S1_at

Description gb:AK109180.1
DB_XREF= gi:32994389
TID=Os.56053.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A03, full insert sequence.
FL= gb:AK109180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4309010/11expressed protein
LOC_Os05g082409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56053.1.S1_at--1053--1313Chr05:4475635..4475659 (25 bp)
AGAGCAGCGAGAGAAAGAAACCCTA
LOC_Os05g08240
Os.56053.1.S1_at--135--1432Chr04:25299620..25299644 (25 bp)
AGAAACCCTAGAATGCATGGCGGCG
LOC_Os04g43090
Os.56053.1.S1_at--1150--793Chr05:4475558..4475582 (25 bp)
ATGGTGGCCTAGATCGGGTAGCCCC
LOC_Os05g08240
Os.56053.1.S1_at--238--7853Chr05:4475542..4475566 (25 bp)
GGTAGCCCCGGCGAATCGTCAACGG
LOC_Os05g08240
Os.56053.1.S1_at--155--5752Chr05:4475493..4475517 (25 bp)
GACGGCTGCGCTGCATTGGCGGCGG
LOC_Os05g08240
Os.56053.1.S1_at--6--3073Chr05:4475248..4475272 (25 bp)
AATCTTTTCGAGCAAGCTGATGTTT
LOC_Os05g08240
Os.56053.1.S1_at--527--3872Chr05:4475215..4475239 (25 bp)
CTGTTCACTGAAGTTCCGATGTAAT
LOC_Os05g08240
Os.56053.1.S1_at--327--1231Chr04:25299204..25299228 (25 bp)
AGTTCCGATGTAATATGTGTTCCGA
LOC_Os04g43090
Os.56053.1.S1_at--805--7413Chr05:4475205..4475227 (23 bp)
GTGTTCCGATGTAATATGTCTATCA
LOC_Os05g08240
Os.56053.1.S1_at--527--753Chr05:4475190..4475214 (25 bp)
ATGTCTATCAGTCAATTCTAGTGGT
LOC_Os05g08240
Os.56053.1.S1_at--547--9733Chr05:4475179..4475203 (25 bp)
TCAATTCTAGTGGTATGGTTTGCAT
LOC_Os05g08240
Target Sequence 
AGAGCAGCGAGAGAAAGAAACCCTAGAATGCATGGCGGCGATAGATGGCGGCGGGAGTAGGTTGGACTGGCGACCCGATG
GTGGCCTAGATCGGGTAGCCCCGGCGAATCGTCAACGGCGGCGGGCGCGGCAGTCTGGATGCGACGGCTGCGCTGCATTG
GCGGCGGCGGCGATTCGTCGGCGATGGCGGGCATGGCTGTCTGGATGCGACGGCTGTGCTGCATCGGTGGCGGTGGCGAT
TCGTCAGGGTCGGAGGGCAACGGCCTCGATGCGACGGCGGCGCTGCATCGGCGGGAGGCCGGCGATGGTTGGATGCGGAT
GAAACTGATGAAATTCAAGGATAAGCGAGCAACCTTCACAACTGGATGGAATGCTTTGGTTGGAGCCAATCTTTTCGAGC
AAGCTGATGTTTGTGTGTTTCTGTTCACTGAAGTTCCGATGTAATATGTGTTCCGATGTAATATGTCTATCAGTCAATTC
TAGTGGTATGGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis