Browse Element(s) Details


OsAffx.14250.1.S1_at

Description tigr:9632.m04122
TID=OsAffx.14250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4306011/11enzyme of the cupin superfamily, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43030OsAffx.26669.1.S1_at11/114+25241151..25249210Lipase family protein, expressed
LOC_Os04g43040Os.19589.1.S1_at11/114+25249577..25252424expressed protein
LOC_Os04g43050Os.27988.1.A1_at11/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43050OsAffx.26439.1.S1_x_at10/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43060OsAffx.14250.1.S1_at11/114+25273148..25274023enzyme of the cupin superfamily, putative, expressed
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14250.1.S1_at--1132--1851Chr04:25273383..25273407 (25 bp)
ACGACGTCGAGTCCGGACACCATGG
LOC_Os04g43060
OsAffx.14250.1.S1_at--911--891Chr04:25273459..25273483 (25 bp)
AGGCGCGCTTGCTTCAGCTCGGCAT
LOC_Os04g43060
OsAffx.14250.1.S1_at--601--3591Chr04:25273466..25273490 (25 bp)
CTTGCTTCAGCTCGGCATCAAGTCG
LOC_Os04g43060
OsAffx.14250.1.S1_at--352--6211Chr04:25273670..25273694 (25 bp)
GAGGCTGACGTGCTACCTCCTCAAG
LOC_Os04g43060
OsAffx.14250.1.S1_at--1051--7371Chr04:25273701..25273725 (25 bp)
GTGAGGGCCTCCGTGAAGGGCACCG
LOC_Os04g43060
OsAffx.14250.1.S1_at--1046--9651Chr04:25273777..25273801 (25 bp)
TCAGCTGCACATGGGACGTCGTCGT
LOC_Os04g43060
OsAffx.14250.1.S1_at--810--2711Chr04:25273812..25273836 (25 bp)
AAGCACTACAACTTCGACTCCTAGT
LOC_Os04g43060
OsAffx.14250.1.S1_at--466--9351Chr04:25273825..25273849 (25 bp)
TCGACTCCTAGTCAGTTAAACACCA
LOC_Os04g43060
OsAffx.14250.1.S1_at--283--6771Chr04:25273839..25273863 (25 bp)
GTTAAACACCAAGCTAGACATGCAT
LOC_Os04g43060
OsAffx.14250.1.S1_at--156--651Chr04:25273862..25273886 (25 bp)
ATGCATCATTCATGCTTCGCTCGAT
LOC_Os04g43060
OsAffx.14250.1.S1_at--223--4811Chr04:25273880..25273904 (25 bp)
GCTCGATCGTCTCTTCTTAATTAAT
LOC_Os04g43060
Target Sequence 
ACGACGTCGAGTCCGGACACCATGGCGGCGGCGGCCGGCCCCAGCCTGTCCATCACCGTCGAGAAGAACCCGCCGGAGGC
GCGCTTGCTTCAGCTCGGCATCAAGTCGTGGCCCAAATGGGGGTGTCCGCCGGGGAAGTTCCCGCTCAAGTTCGACGCGA
GGCTGACGTGCTACCTCCTCAAGGGCAGGGTGAGGGCCTCCGTGAAGGGCACCGGGAGGTGCGTCGAGTTCGGCGCCGGC
GACCTCGTCGTCTTCCCCAAGGGCCTCAGCTGCACATGGGACGTCGTCGTCGGCATCGACAAGCACTACAACTTCGACTC
CTAGTCAGTTAAACACCAAGCTAGACATGCATGCATCATTCATGCTTCGCTCGATCGTCTCTTCTTAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis