Browse Element(s) Details


Os.27196.1.S1_x_at

Description gb:AK073609.1
DB_XREF= gi:32983632
TID=Os.27196.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048J15, full insert sequence.
FL= gb:AK073609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4322010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g43230Os.54245.1.S1_at11/114+25361853..25363998expressed protein
LOC_Os04g43240OsAffx.18229.1.S1_x_at1/114+25365486..25366283hypothetical protein
LOC_Os04g43250NANA4+25366954..25371558retrotransposon protein, putative, unclassified
LOC_Os04g43260NANA4+25372148..25375134hypothetical protein
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27196.1.S1_x_at--141--1271Chr04:25355641..25355665 (25 bp)
AGATACCCTGCTGCACATATTCAAC
LOC_Os04g43220
Os.27196.1.S1_x_at--760--191Chr04:25355241..25355263 (23 bp)
ATTTGCCTCAGTCAGTAATCCAGTC
LOC_Os04g43220
Os.27196.1.S1_x_at--802--8991Chr04:25355114..25355138 (25 bp)
TGAAGAGCCGTGTGCAGTTTGCCTT
LOC_Os04g43220
Os.27196.1.S1_x_at--212--1211Chr04:25355099..25355123 (25 bp)
AGTTTGCCTTGATAATCCCTCTATT
LOC_Os04g43220
Os.27196.1.S1_x_at--912--9531Chr04:25355080..25355104 (25 bp)
TCTATTGGTGATACGATCCGCCGCT
LOC_Os04g43220
Os.27196.1.S1_x_at--181--7911Chr04:25354830..25354854 (25 bp)
GGTTCCATGAATATTCTGCCCTTAG
LOC_Os04g43220
Os.27196.1.S1_x_at--904--2911Chr04:25354791..25354815 (25 bp)
AAGGAAGTCGCCTGCAACAGTGGTT
LOC_Os04g43220
Os.27196.1.S1_x_at--189--3471Chr04:25354774..25354798 (25 bp)
CAGTGGTTGCGTTTCTATCTTTAGA
LOC_Os04g43220
Os.27196.1.S1_x_at--848--6671Chr04:25354728..25354752 (25 bp)
GTTGCGCAATCTTGTAGAGCCTTGT
LOC_Os04g43220
Os.27196.1.S1_x_at--782--1351Chr04:25354713..25354737 (25 bp)
AGAGCCTTGTTCTAATTGCCTTCGG
LOC_Os04g43220
Os.27196.1.S1_x_at--91--3651NONE
CTTCGGTGCTAATTCTCTGGTTTGT
NONE
Target Sequence 
AGATACCCTGCTGCACATATTCAACCTAATATTGATCTAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCA
CCAGCATGCTGGTGCTTCAGAAAGCCAGATCAATAATTTGCCTCAGTCAGTAATCCAGTCAAATATTGAAGAGCCGTGTG
CAGTTTGCCTTGATAATCCCTCTATTGGTGATACGATCCGCCGCTTGCCATGCTTTCACATGTTCCATAAAGAATGCATA
GACGAATGGCTAAGAAGGAAGAAACTATGTCCAGTTTGCAAGTCTGGGATCACATAAAGGTGACAATTCGGTTCCATGAA
TATTCTGCCCTTAGACTCAAGAAAACAGAAGGAAGTCGCCTGCAACAGTGGTTGCGTTTCTATCTTTAGACGACAGTGGT
ATCGGCGGGAGGTTGCGCAATCTTGTAGAGCCTTGTTCTAATTGCCTTCGGTGCTAATTCTCTGGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27196.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis