Browse Element(s) Details


OsAffx.4072.1.S1_at

Description tigr:9632.m04146
TID=OsAffx.4072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4327011/11CER1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g43230Os.54245.1.S1_at11/114+25361853..25363998expressed protein
LOC_Os04g43240OsAffx.18229.1.S1_x_at1/114+25365486..25366283hypothetical protein
LOC_Os04g43250NANA4+25366954..25371558retrotransposon protein, putative, unclassified
LOC_Os04g43260NANA4+25372148..25375134hypothetical protein
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4072.1.S1_at--394--10431Chr04:25382019..25382043 (25 bp)
TTAGCAACTGCCGTGGTGCTCAATA
LOC_Os04g43270
OsAffx.4072.1.S1_at--896--7311Chr04:25382004..25382028 (25 bp)
GTGCTCAATAGCATACCTTTTGGTA
LOC_Os04g43270
OsAffx.4072.1.S1_at--745--9771Chr04:25381948..25381972 (25 bp)
TAAGGTGACCCGTGCAACAGCCATA
LOC_Os04g43270
OsAffx.4072.1.S1_at--431--5271Chr04:25381722..25381746 (25 bp)
GAATGCTCAAGTCTCGAGTTCCAGA
LOC_Os04g43270
OsAffx.4072.1.S1_at--560--10191Chr04:25380760..25380784 (25 bp)
TATATTTATTCCCACGTCACAGTTC
LOC_Os04g43270
OsAffx.4072.1.S1_at--690--8111Chr04:25380715..25380739 (25 bp)
GGACTGCACTTACTTGAGTAACCCA
LOC_Os04g43270
OsAffx.4072.1.S1_at--870--7051Chr04:25380698..25380722 (25 bp)
GTAACCCAGCAATGAAGATCCCAGA
LOC_Os04g43270
OsAffx.4072.1.S1_at--310--651Chr04:25380670..25380693 (24 bp)
ATGCAGAATGTCCACACCTGTGAGA
LOC_Os04g43270
OsAffx.4072.1.S1_at--575--7331Chr04:25380515..25380539 (25 bp)
GTGCATGGCGCATTGCTGGAATATT
LOC_Os04g43270
OsAffx.4072.1.S1_at--25--5691Chr04:25380430..25380454 (25 bp)
GACTTGGTCGGCAGCTATTAAGCAT
LOC_Os04g43270
OsAffx.4072.1.S1_at--891--2711Chr04:25380411..25380435 (25 bp)
AAGCATGGATTCAAACCTCTGACAA
LOC_Os04g43270
Target Sequence 
TTAGCAACTGCCGTGGTGCTCAATAGCATACCTTTTGGTACAAAGCAAGTTTTTCTCTGTGGAAGTAATTCTAAGGTGAC
CCGTGCAACAGCCATAGCTTTATGTCAGAGAGGTGTCCAGGTAATCCTGAATCAAGAGAAAGAATATGGAATGCTCAAGT
CTCGAGTTCCAGAGAGTAGAGCTATCTATCTGAAATTCTCTAATGATGAAACACCACAGATTTGGATAGGAGATAGCATA
GACGATGCACAAGGGAGGGCACCAAAGGGAACTATATTTATTCCCACGTCACAGTTCCCCCTTAAGAAGGCACGCAAGGA
CTGCACTTACTTGAGTAACCCAGCAATGAAGATCCCAGAGACAATGCAGAATGTCCACACCTGTGAGAATTGGCTGCCAA
GAAGGGTGATGAGTGCATGGCGCATTGCTGGAATATTGCATGCTTTAGAAGGTTGGGAAATGCATGAATGTGGAGATGAT
ATGATGACCATTGAGAAGACTTGGTCGGCAGCTATTAAGCATGGATTCAAACCTCTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis