Browse Element(s) Details


OsAffx.14256.1.S1_at

Description tigr:9632.m04152
TID=OsAffx.14256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4332411/11G-patch domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43370NANA4+25427025..25427581Pectinesterase precursor, putative
LOC_Os04g43380NANA4+25431037..25433551transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14256.1.S1_at--988--4291Chr04:25411906..25411930 (25 bp)
CCTACGGCAAAGTGTCGCAGTGGAA
LOC_Os04g43324
OsAffx.14256.1.S1_at--759--4071Chr04:25411958..25411982 (25 bp)
CGAGTTTGTGACTGTGCAGCGGCAC
LOC_Os04g43324
OsAffx.14256.1.S1_at--147--8911Chr04:25411996..25412020 (25 bp)
TGAGCAGGAGCCTTCGGGATCCGAC
LOC_Os04g43324
OsAffx.14256.1.S1_at--198--5151Chr04:25412050..25412074 (25 bp)
GCAACACATTCCCTCTGGTGATGAG
LOC_Os04g43324
OsAffx.14256.1.S1_at--831--4571Chr04:25412079..25412103 (25 bp)
GCGCTCCTAGTTCCGGCGAGGTACA
LOC_Os04g43324
OsAffx.14256.1.S1_at--159--6111Chr04:25412118..25412142 (25 bp)
GAGTCGGAGTTCTTTGCCAAATGGA
LOC_Os04g43324
OsAffx.14256.1.S1_at--678--10811Chr04:25412161..25412185 (25 bp)
TTGTGACGGAAGTGAGGCCCATCCC
LOC_Os04g43324
OsAffx.14256.1.S1_at--528--4211Chr04:25412194..25412218 (25 bp)
CCGCCGTGTGGTATCAGTCGTGGAA
LOC_Os04g43324
OsAffx.14256.1.S1_at--603--5291Chr04:25412216..25412240 (25 bp)
GAAGGATCTCTTCACGCCGGAGCTG
LOC_Os04g43324
OsAffx.14256.1.S1_at--746--3391Chr04:25412265..25412289 (25 bp)
CAGCTCGAGACTGGCCTGGGCATGA
LOC_Os04g43324
OsAffx.14256.1.S1_at--438--8651Chr04:25412281..25412305 (25 bp)
TGGGCATGATAAACCGCGCGGCGCA
LOC_Os04g43324
Target Sequence 
CCTACGGCAAAGTGTCGCAGTGGAAGGGCGTGTTCGACCCGGAGACGTGGGACGAGTTTGTGACTGTGCAGCGGCACGTC
GTGCCGGTGGTGAGCAGGAGCCTTCGGGATCCGACGATCTCGCCGACGAGGACATGGGGTGGGAGCAACACATTCCCTCT
GGTGATGAGGTGGGCGCTCCTAGTTCCGGCGAGGTACATGGTGCCGGTTCTGGAGTCGGAGTTCTTTGCCAAATGGAGGT
ACGCGGTGTACCCGTTTGTGACGGAAGTGAGGCCCATCCCGGGGAAGGCCGCCGTGTGGTATCAGTCGTGGAAGGATCTC
TTCACGCCGGAGCTGCTCGCCGACGAGCGCGTGCTCCTCCAGCTCGAGACTGGCCTGGGCATGATAAACCGCGCGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis